myRT

myRT report for GCA_001836625.1_ASM183662v1

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Seq: KV829757.1 Pseudomonas sp. HMSC060F12 genomic scaffold Scaffold237, whole genome shotgun sequence (130456 bp)
Overview 1 RT 1: 123885-130359 bp Neighborhood of RT #1 [123885, 130359] COG4271 CHD CHD RVT-GII GIIM Feature: gene Location: 123885-124811 bp Feature: domain Description: COG4271 Location: 124125-124794 bp Feature: domain Description: COG4271 Location: 1 241 25-1 24794 bp Feature: gene Location: 124892-126436 bp Feature: domain Description: CHD Location: 125108-125522 bp Feature: domain Description: CHD Location: 1 251 08-1 25522 bp Feature: domain Description: CHD Location: 125750-126239 bp Feature: domain Description: CHD Location: 1 25750-1 26239 bp Feature: gene Location: 128431-129699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128644-129301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28644-1 29301 bp Feature: domain Description: GIIM Note: maturase Location: 129379-129601 bp Feature: domain Description: GIIM Note: maturase Location: 1 29379-1 29601 bp Feature: gene Location: 130192-130359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: KV829720.1 Pseudomonas sp. HMSC060F12 genomic scaffold Scaffold122, whole genome shotgun sequence (378950 bp)
Overview 1 RT 1: 51130-59983 bp 2 RT 2: 76248-86545 bp Neighborhood of RT #1 [51130, 59991] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76248, 86556] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 51130-51804 bp Feature: domain Description: NTP_transferase_like_1 Location: 51136-51775 bp Feature: domain Description: NTP_transferase_like_1 Location: 51136-51775 bp Feature: gene Location: 51801-52817 bp Feature: domain Description: COG3178 Location: 51804-52803 bp Feature: domain Description: COG3178 Location: 51804-52 803 bp Feature: gene Location: 54090-55802 bp Feature: RT Description: RVT_N Location: 54147-54390 bp Feature: RT Description: RVT_N Location: 54147-54390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54435-55071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54435-55071 bp Feature: domain Description: YkfC Location: 55278-55431 bp Feature: domain Description: YkfC Location: 552 78-55431 bp Feature: domain Description: HNH Note: nucleases Location: 55608-55746 bp Feature: domain Description: HNH Note: nucleases Location: 55608-55746 bp Feature: gene Location: 55935-58718 bp Feature: domain Description: LptD Location: 56130-58704 bp Feature: domain Description: LptD Location: 56130-58704 bp Feature: gene Location: 58699-59991 bp Feature: domain Description: PRK10770 Location: 58789-59983 bp Feature: domain Description: PRK10770 Location: 58789-59983 bp Feature: gene Location: 76248-78101 bp Feature: domain Description: PRK05658 Location: 76260-78099 bp Feature: domain Description: PRK05658 Location: 762 60-78099 bp Feature: gene Location: 78208-81945 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78316-78973 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 78316-78973 bp Feature: domain Description: PRK09776 Location: 79186-79657 bp Feature: domain Description: PRK09776 Location: 79186-79657 bp Feature: domain Description: PAS Location: 79714-80239 bp Feature: domain Description: PAS Location: 79714-802 39 bp Feature: domain Description: PRK10060 Location: 80248-81895 bp Feature: domain Description: PRK10060 Location: 802 48-81895 bp Feature: gene Location: 83026-84711 bp Feature: RT Description: RVT_N Location: 83083-83323 bp Feature: RT Description: RVT_N Location: 83083-8332 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83371-84007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83371-84007 bp Feature: domain Description: GIIM Note: maturase Location: 84061-84292 bp Feature: domain Description: GIIM Note: maturase Location: 84061-842 92 bp Feature: domain Description: HNH Note: nucleases Location: 84544-84682 bp Feature: domain Description: HNH Note: nucleases Location: 84544-84682 bp Feature: gene Location: 85039-85176 bp Feature: gene Location: 85435-86556 bp Feature: domain Description: COG3177 Location: 85453-86545 bp Feature: domain Description: COG3177 Location: 85453-86545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )