myRT

myRT report for GCA_001836645.1_ASM183664v1

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Seq: KV829947.1 Pseudomonas sp. HMSC060G01 genomic scaffold Scaffold23, whole genome shotgun sequence (942152 bp)
Overview 1 RT 1: 858915-866846 bp Neighborhood of RT #1 [858915, 866929] COG4271 CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 858915-859841 bp Feature: domain Description: COG4271 Location: 859155-859824 bp Feature: domain Description: COG4271 Location: 8591 55-859824 bp Feature: gene Location: 859922-861466 bp Feature: domain Description: CHD Location: 860138-860552 bp Feature: domain Description: CHD Location: 8601 38-860552 bp Feature: domain Description: CHD Location: 860780-861269 bp Feature: domain Description: CHD Location: 860780-861 269 bp Feature: gene Location: 863461-864729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863674-864331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863674-864331 bp Feature: domain Description: GIIM Note: maturase Location: 864409-864631 bp Feature: domain Description: GIIM Note: maturase Location: 864409-864631 bp Feature: gene Location: 865118-865759 bp Feature: domain Description: DUF772 Location: 865268-865463 bp Feature: domain Description: DUF772 Location: 865268-865463 bp Feature: gene Location: 866102-866929 bp Feature: domain Description: ABC_phnC Location: 866132-866846 bp Feature: domain Description: ABC_phnC Location: 8661 32-866846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: KV830006.1 Pseudomonas sp. HMSC060G01 genomic scaffold Scaffold189, whole genome shotgun sequence (379098 bp)
Overview 1 RT 1: 292289-302716 bp 2 RT 2: 318975-327940 bp Neighborhood of RT #1 [292289, 302718] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318975, 327969] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292289-293410 bp Feature: domain Description: COG3177 Location: 292307-293399 bp Feature: domain Description: COG3177 Location: 2 92 307-2 93399 bp Feature: gene Location: 293669-293806 bp Feature: gene Location: 294134-295819 bp Feature: RT Description: RVT_N Location: 294191-294431 bp Feature: RT Description: RVT_N Location: 2 94191-2 94431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294479-295115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94479-2 95115 bp Feature: domain Description: GIIM Note: maturase Location: 295169-295400 bp Feature: domain Description: GIIM Note: maturase Location: 2 95169-2 95400 bp Feature: domain Description: HNH Note: nucleases Location: 295652-295790 bp Feature: domain Description: HNH Note: nucleases Location: 2 95652 -2 95790 bp Feature: gene Location: 297021-300758 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297129-297786 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 9712 9-2 97786 bp Feature: domain Description: PRK09776 Location: 297999-298470 bp Feature: domain Description: PRK09776 Location: 2 97999-2 98470 bp Feature: domain Description: PAS Location: 298527-299052 bp Feature: domain Description: PAS Location: 2 9852 7-2 99052 bp Feature: domain Description: PRK10060 Location: 299061-300708 bp Feature: domain Description: PRK10060 Location: 2 99061-300708 bp Feature: gene Location: 300865-302718 bp Feature: domain Description: PRK05658 Location: 300877-302716 bp Feature: domain Description: PRK05658 Location: 300877-302 716 bp Feature: gene Location: 318975-320267 bp Feature: domain Description: PRK10770 Location: 319065-320259 bp Feature: domain Description: PRK10770 Location: 319065-32 02 59 bp Feature: gene Location: 320248-323031 bp Feature: domain Description: LptD Location: 320443-323017 bp Feature: domain Description: LptD Location: 32 0443-32 3017 bp Feature: gene Location: 323164-324876 bp Feature: RT Description: RVT_N Location: 323221-323464 bp Feature: RT Description: RVT_N Location: 32 32 2 1-32 3464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323509-324145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3509-32 4145 bp Feature: domain Description: YkfC Location: 324352-324505 bp Feature: domain Description: YkfC Location: 32 4352 -32 4505 bp Feature: domain Description: HNH Note: nucleases Location: 324682-324820 bp Feature: domain Description: HNH Note: nucleases Location: 32 4682 -32 482 0 bp Feature: gene Location: 326282-327298 bp Feature: domain Description: COG3178 Location: 326285-327284 bp Feature: domain Description: COG3178 Location: 32 62 85-32 72 84 bp Feature: gene Location: 327295-327969 bp Feature: domain Description: NTP_transferase_like_1 Location: 327301-327940 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 7301-32 7940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)