myRT

myRT report for GCA_001837695.1_ASM183769v1

Download annotations/find similar RTs

Seq: KV833601.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold25, whole genome shotgun sequence (3287 bp)
Overview 1 RT 1: 1-2542 bp Neighborhood of RT #1 [1, 3204] HsdM RVT-AbiP2 Feature: gene Location: 1-1478 bp Ori: OHQ77923.1 Feature: domain Description: HsdM Location: 22-1447 bp Feature: domain Description: HsdM Location: 22-1 447 bp Feature: gene Location: 1816-3204 bp Ori: OHQ77924.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2077-2542 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2077-2542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: KV833847.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold799, whole genome shotgun sequence (86727 bp)
Overview 1 RT 1: 14472-21303 bp Neighborhood of RT #1 [14472, 21311] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 14472-15353 bp Ori: OHQ67599.1 Feature: domain Description: CcmA Location: 14475-15345 bp Feature: domain Description: CcmA Location: 14475-15345 bp Feature: gene Location: 15607-16206 bp Ori: OHQ67600.1 Feature: domain Description: AcrR Location: 15625-16111 bp Feature: domain Description: AcrR Location: 1562 5-16111 bp Feature: gene Location: 16693-18081 bp Ori: OHQ67601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17014-17629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17014-1762 9 bp Feature: domain Description: GIIM Note: maturase Location: 17686-17902 bp Feature: domain Description: GIIM Note: maturase Location: 17686-17902 bp Feature: gene Location: 18174-19475 bp Ori: OHQ67602.1 Feature: domain Description: CE4_DAC_u3_5s Location: 18843-19233 bp Feature: domain Description: CE4_DAC_u3_5s Location: 18843-192 33 bp Feature: gene Location: 20055-21311 bp Ori: OHQ67603.1 Feature: domain Description: PRK13354 Location: 20058-21303 bp Feature: domain Description: PRK13354 Location: 2 0058-2 1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KV833642.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold87, whole genome shotgun sequence (11323 bp)
Overview 1 RT 1: 2120-6721 bp Neighborhood of RT #1 [2120, 6729] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 2120-2365 bp Ori: OHQ67262.1 Feature: domain Description: HTH_XRE Location: 2171-2357 bp Feature: domain Description: HTH_XRE Location: 2171-23 57 bp Feature: gene Location: 2741-3220 bp Ori: OHQ67263.1 Feature: domain Description: DUF3841 Location: 2750-3125 bp Feature: domain Description: DUF3 841 Location: 2750-3 125 bp Feature: gene Location: 3398-4894 bp Ori: OHQ67270.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3806-4262 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 806-4262 bp Feature: gene Location: 5040-5354 bp Ori: OHQ67264.1 Feature: domain Description: AlbA_2 Location: 5079-5250 bp Feature: domain Description: AlbA_2 Location: 5079-5250 bp Feature: gene Location: 5470-6729 bp Ori: OHQ67265.1 Feature: domain Description: PRK09290 Location: 5476-6721 bp Feature: domain Description: PRK09290 Location: 5476-6721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)

Seq: KV833747.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold333, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Ori: OHQ75240.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054 -1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 234 7-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: KV833711.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold245, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 384-2476 bp Neighborhood of RT #1 [384, 2592] RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Ori: OHQ78244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: KV833754.1 Enterococcus sp. HMSC072D11 genomic scaffold Scaffold346, whole genome shotgun sequence (2685 bp)
Overview 1 RT 1: 115-1114 bp Neighborhood of RT #1 [115, 1941] RVT-GII Feature: gene Location: 115-1941 bp Ori: OHQ74868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII