myRT

myRT report for GCA_001837845.1_ASM183784v1

Download annotations/find similar RTs

Seq: KV834338.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold147, whole genome shotgun sequence (11323 bp)
Overview 1 RT 1: 4595-9196 bp Neighborhood of RT #1 [4595, 9204] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Feature: gene Location: 4595-5854 bp Ori: OHQ94931.1 Feature: domain Description: PRK09290 Location: 4601-5846 bp Feature: domain Description: PRK09290 Location: 4601 -5846 bp Feature: gene Location: 5970-6284 bp Ori: OHQ94932.1 Feature: domain Description: AlbA_2 Location: 6009-6180 bp Feature: domain Description: AlbA_2 Location: 6009-61 80 bp Feature: gene Location: 6430-7926 bp Ori: OHQ94938.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6838-7294 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6838-7294 bp Feature: gene Location: 8104-8583 bp Ori: OHQ94933.1 Feature: domain Description: DUF3841 Location: 8113-8488 bp Feature: domain Description: DUF3841 Location: 81 1 3-8488 bp Feature: gene Location: 8959-9204 bp Ori: OHQ94934.1 Feature: domain Description: HTH_XRE Location: 9010-9196 bp Feature: domain Description: HTH_XRE Location: 901 0-91 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952), HTH_XRE (smart00530)

Seq: KV834517.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold902, whole genome shotgun sequence (1064 bp)
Overview 1 RT 1: 84-810 bp Neighborhood of RT #1 [84, 1031] RVT-AbiP2 Feature: gene Location: 84-1031 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 345-810 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 345-810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2

Seq: KV834501.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold709, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Ori: OHQ84548.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 23 47-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: KV834411.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold294, whole genome shotgun sequence (2685 bp)
Overview 1 RT 1: 115-1114 bp Neighborhood of RT #1 [115, 1941] RVT-GII Feature: gene Location: 115-1941 bp Ori: OHQ90910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 15-1114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KV834502.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold712, whole genome shotgun sequence (87339 bp)
Overview 1 RT 1: 67701-72820 bp Neighborhood of RT #1 [67701, 72828] RVT-GII GIIM AcrR CcmA Feature: gene Location: 67701-68382 bp Feature: gene Location: 68483-69126 bp Feature: gene Location: 69219-70607 bp Ori: OHQ84275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69540-70155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695 40-7015 5 bp Feature: domain Description: GIIM Note: maturase Location: 70212-70428 bp Feature: domain Description: GIIM Note: maturase Location: 70212-70428 bp Feature: gene Location: 71094-71693 bp Ori: OHQ84276.1 Feature: domain Description: AcrR Location: 71112-71598 bp Feature: domain Description: AcrR Location: 71112-715 98 bp Feature: gene Location: 71947-72828 bp Ori: OHQ84277.1 Feature: domain Description: CcmA Location: 71950-72820 bp Feature: domain Description: CcmA Location: 7195 0-72820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133)

Seq: KV834399.1 Enterococcus sp. HMSC074F07 genomic scaffold Scaffold266, whole genome shotgun sequence (2720 bp)
Overview 1 RT 1: 123-2331 bp Neighborhood of RT #1 [123, 2331] RVT-GII HNHc Feature: gene Location: 123-1982 bp Ori: OHQ91577.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-186 6 bp Feature: gene Location: 2101-2331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)