myRT

myRT report for GCA_001854735.1_ASM185473v1

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Seq: MBJU01000103.1 Photorhabdus temperata strain Hm contig_55, whole genome shotgun sequence (43720 bp)
Overview 1 RT 1: 3087-5505 bp Neighborhood of RT #1 [3087, 5612] DDE_Tnp_Tn3 RVT-GII COG5340 AbiEii Feature: gene Location: 3087-3374 bp Ori: OHV51501.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 3090-3312 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3090-331 2 bp Feature: gene Location: 3463-3681 bp Feature: gene Location: 3701-3886 bp Ori: OHV51503.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719-3866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 9-3866 bp Feature: gene Location: 4166-4702 bp Ori: OHV51504.1 Feature: domain Description: COG5340 Location: 4178-4511 bp Feature: domain Description: COG5340 Location: 41 78-451 1 bp Feature: gene Location: 4692-5612 bp Ori: OHV51505.1 Feature: domain Description: AbiEii Location: 4803-5505 bp Feature: domain Description: AbiEii Location: 4803-5505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843)

Seq: MBJU01000063.1 Photorhabdus temperata strain Hm contig_19, whole genome shotgun sequence (115674 bp)
Overview 1 RT 1: 90204-95540 bp Neighborhood of RT #1 [90204, 95540] TIGR02646 COG3950 RVT-Retrons PRK10347 Feature: gene Location: 90204-90851 bp Ori: OHV55940.1 Feature: domain Description: TIGR02646 Location: 90273-90660 bp Feature: domain Description: TIGR02 646 Location: 902 73-90660 bp Feature: gene Location: 90854-92506 bp Ori: OHV55941.1 Feature: domain Description: COG3950 Location: 91052-92471 bp Feature: domain Description: COG3950 Location: 91052 -92 471 bp Feature: gene Location: 92503-93435 bp Ori: OHV55942.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92605-93202 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92 605-932 02 bp Feature: gene Location: 93853-94260 bp Feature: domain Description: PRK10347 Location: 93868-94249 bp Feature: domain Description: PRK10347 Location: 93868-942 49 bp Feature: gene Location: 94629-95540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK10347 (putative adenosine monophosphate-protein transferase Fic)

Seq: MBJU01000132.1 Photorhabdus temperata strain Hm contig_81, whole genome shotgun sequence (15622 bp)
Overview 1 RT 1: 10243-15509 bp Neighborhood of RT #1 [10243, 15622] HTH_XRE RVT-Retrons DDE_Tnp_1_3 Feature: gene Location: 10243-10482 bp Feature: gene Location: 10534-10824 bp Ori: OHV48868.1 Feature: domain Description: HTH_XRE Location: 10546-10711 bp Feature: domain Description: HTH_XRE Location: 10546-10711 bp Feature: gene Location: 10805-11777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10955-11165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10955-11165 bp Feature: gene Location: 11817-15270 bp Feature: gene Location: 15275-15622 bp Feature: domain Description: DDE_Tnp_1_3 Location: 15278-15509 bp Feature: domain Description: DDE_Tnp_1_3 Location: 15278-15509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DDE_Tnp_1_3 (pfam13612)

Seq: MBJU01000062.1 Photorhabdus temperata strain Hm contig_18, whole genome shotgun sequence (118827 bp)
Overview 1 RT 1: 50496-55251 bp Neighborhood of RT #1 [50496, 55251] DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 50496-50963 bp Feature: gene Location: 51401-51748 bp Ori: OHV56054.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 51425-51695 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 514 25-51695 bp Feature: gene Location: 51897-53291 bp Ori: OHV55991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52251-52914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52251-52914 bp Feature: domain Description: GIIM Note: maturase Location: 52983-53211 bp Feature: domain Description: GIIM Note: maturase Location: 52983-53211 bp Feature: gene Location: 54726-55052 bp Feature: gene Location: 55042-55251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)