myRT

myRT report for GCA_001854805.1_ASM185480v1

Download annotations/find similar RTs

Seq: MBLO01000185.1 Frankia sp. BMG5.36 contig_264, whole genome shotgun sequence (1817 bp)
Overview 1 RT 1: 749-1232 bp Neighborhood of RT #1 [749, 1705] RVT-GII GIIM Feature: gene Location: 749-1705 bp Ori: OHV51594.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-935 bp Feature: domain Description: GIIM Note: maturase Location: 998-1232 bp Feature: domain Description: GIIM Note: maturase Location: 998-1 232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MBLO01000008.1 Frankia sp. BMG5.36 contig_104, whole genome shotgun sequence (45993 bp)
Overview 1 RT 1: 41066-44653 bp Neighborhood of RT #1 [41066, 44697] SpvB DUF2235 RVT-GII GIIM KOG4768 Feature: gene Location: 41066-41455 bp Ori: OHV73959.1 Feature: domain Description: SpvB Location: 41210-41315 bp Feature: domain Description: SpvB Location: 412 10-41315 bp Feature: gene Location: 41571-42761 bp Ori: OHV73960.1 Feature: domain Description: DUF2235 Location: 41580-42447 bp Feature: domain Description: DUF2 2 35 Location: 41580-42 447 bp Feature: gene Location: 43035-43958 bp Ori: OHV73961.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43038-43203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43038-432 03 bp Feature: domain Description: GIIM Note: maturase Location: 43272-43500 bp Feature: domain Description: GIIM Note: maturase Location: 432 72 -43500 bp Feature: gene Location: 44356-44697 bp Ori: OHV73962.1 Feature: domain Description: KOG4768 Location: 44440-44653 bp Feature: domain Description: KOG4768 Location: 44440-44653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpvB (pfam03534), DUF2235 (pfam09994), RVT-GII, GIIM (pfam08388), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: MBLO01000161.1 Frankia sp. BMG5.36 contig_242, whole genome shotgun sequence (3219 bp)
Overview 1 RT 1: 810-2943 bp Neighborhood of RT #1 [810, 2975] RVT-GII Recombinase Zn_ribbon_recom HTH_17 HTH_17 Feature: gene Location: 810-1325 bp Ori: OHV53092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071-13 02 bp Feature: gene Location: 1335-2975 bp Ori: OHV53093.1 Feature: domain Description: Recombinase Location: 1341-1698 bp Feature: domain Description: Recombinase Location: 13 41-1698 bp Feature: domain Description: Zn_ribbon_recom Location: 1761-1938 bp Feature: domain Description: Zn_ribbon_recom Location: 1761-193 8 bp Feature: domain Description: HTH_17 Location: 2649-2775 bp Feature: domain Description: HTH_17 Location: 2649-2775 bp Feature: domain Description: HTH_17 Location: 2838-2943 bp Feature: domain Description: HTH_17 Location: 283 8-2943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: MBLO01000066.1 Frankia sp. BMG5.36 contig_157, whole genome shotgun sequence (33606 bp)
Overview 1 RT 1: 29110-33576 bp Neighborhood of RT #1 [29110, 33606] RVT-GII GIIM RVT-GII Feature: gene Location: 29110-29433 bp Feature: gene Location: 30089-30301 bp Feature: gene Location: 30838-32298 bp Ori: OHV60770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31171-31867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31171-31867 bp Feature: domain Description: GIIM Note: maturase Location: 31939-32146 bp Feature: domain Description: GIIM Note: maturase Location: 31939-3214 6 bp Feature: gene Location: 32877-33606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33138-33576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33138-33576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MBLO01000170.1 Frankia sp. BMG5.36 contig_250, whole genome shotgun sequence (2937 bp)
Overview 1 RT 1: 609-1980 bp Neighborhood of RT #1 [609, 2447] RVT_N RVT-GII GIIM Feature: gene Location: 609-2447 bp Ori: OHV52499.1 Feature: domain Description: RVT_N Location: 741-981 bp Feature: domain Description: RVT_N Location: 741-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1752-1980 bp Feature: domain Description: GIIM Note: maturase Location: 175 2-1980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MBLO01000138.1 Frankia sp. BMG5.36 contig_221, whole genome shotgun sequence (7270 bp)
Overview 1 RT 1: 1-6194 bp Neighborhood of RT #1 [1, 6897] RVT-GII excise excise excise InsE Tra5 PinE Zn_ribbon_recom RVT-GII Feature: gene Location: 1-327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-328 bp Feature: gene Location: 335-1507 bp Feature: domain Description: excise Location: 851-929 bp Feature: domain Description: excise Location: 851-929 bp Feature: domain Description: excise Location: 1070-1157 bp Feature: domain Description: excise Location: 1070-1157 bp Feature: domain Description: excise Location: 1295-1409 bp Feature: domain Description: excise Location: 1295-1409 bp Feature: gene Location: 1585-2016 bp Ori: OHV55077.1 Feature: domain Description: InsE Location: 1657-1960 bp Feature: domain Description: InsE Location: 16 57-196 0 bp Feature: gene Location: 2013-3017 bp Ori: OHV55078.1 Feature: domain Description: Tra5 Location: 2325-2859 bp Feature: domain Description: Tra5 Location: 2325-2859 bp Feature: gene Location: 3051-4376 bp Feature: domain Description: PinE Location: 3099-3696 bp Feature: domain Description: PinE Location: 3099-36 96 bp Feature: domain Description: Zn_ribbon_recom Location: 4038-4203 bp Feature: domain Description: Zn_ribbon_recom Location: 4038-4203 bp Feature: gene Location: 5405-6897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5813-6194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5813-6 194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, excise (TIGR01764), InsE (COG2963), Tra5 (COG2801), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: MBLO01000181.1 Frankia sp. BMG5.36 contig_260, whole genome shotgun sequence (2088 bp)
Overview 1 RT 1: 497-1805 bp Neighborhood of RT #1 [497, 1957] RVT-GII GIIM Feature: gene Location: 497-1957 bp Ori: OHV51824.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1526 bp Feature: domain Description: GIIM Note: maturase Location: 1598-1805 bp Feature: domain Description: GIIM Note: maturase Location: 1598-1805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MBLO01000032.1 Frankia sp. BMG5.36 contig_126, whole genome shotgun sequence (61114 bp)
Overview 1 RT 1: 82-3494 bp Neighborhood of RT #1 [82, 3538] RVT-GII Intron_maturas2 HNHc DDE_Tnp_4 F420_MSMEG_4141 Feature: gene Location: 82-1395 bp Ori: OHV66553.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91-664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91-664 bp Feature: domain Description: Intron_maturas2 Location: 766-997 bp Feature: domain Description: Intron_maturas2 Location: 766-997 bp Feature: domain Description: HNHc Note: nucleases Location: 1177-1351 bp Feature: domain Description: HNHc Note: nucleases Location: 1177-1351 bp Feature: gene Location: 1562-2230 bp Feature: domain Description: DDE_Tnp_4 Location: 1883-2228 bp Feature: domain Description: DDE_Tnp_4 Location: 18 8 3-2228 bp Feature: gene Location: 2627-3538 bp Ori: OHV66554.1 Feature: domain Description: F420_MSMEG_4141 Location: 2672-3494 bp Feature: domain Description: F420_MSMEG_4141 Location: 2672-3494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_4 (pfam13359), F420_MSMEG_4141 (TIGR03620)

Seq: MBLO01000109.1 Frankia sp. BMG5.36 contig_196, whole genome shotgun sequence (12514 bp)
Overview 1 RT 1: 7894-11828 bp Neighborhood of RT #1 [7894, 12079] tmk TMPK Methyltransf_19 RVT-GII GIIM DUF5372 Feature: gene Location: 7894-8625 bp Ori: OHV57163.1 Feature: domain Description: tmk Location: 7927-7996 bp Feature: domain Description: tmk Location: 79 27-79 9 6 bp Feature: domain Description: TMPK Location: 8131-8488 bp Feature: domain Description: TMPK Location: 8131-8488 bp Feature: gene Location: 8744-9541 bp Ori: OHV57164.1 Feature: domain Description: Methyltransf_19 Location: 8807-9533 bp Feature: domain Description: Methyltransf_19 Location: 8807-9 533 bp Feature: gene Location: 9538-10563 bp Ori: OHV57165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9589-9781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 589 -9 781 bp Feature: domain Description: GIIM Note: maturase Location: 9835-10069 bp Feature: domain Description: GIIM Note: maturase Location: 9 835-10069 bp Feature: gene Location: 11211-11573 bp Feature: gene Location: 11585-12079 bp Ori: OHV57166.1 Feature: domain Description: DUF5372 Location: 11603-11828 bp Feature: domain Description: DUF5372 Location: 11603-11828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tmk (PRK00698), TMPK (cd01672), Methyltransf_19 (pfam04672), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)