myRT

myRT report for GCA_001856025.1_ASM185602v1

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Seq: MBRJ01000059.1 Bacillus oceanisediminis strain Bhandara28 WS2TSB28_contig_62, whole genome shotgun sequence (136282 bp)
Overview 1 RT 1: 78663-86449 bp 2 RT 2: 118480-124031 bp Neighborhood of RT #1 [78663, 86449] DUF1292 RVT-GII HNHc RVT-GII HNHc Neighborhood of RT #2 [118480, 124033] dnaG RVT-GII GIIM HNHc SSB_OBF PRK06751 Feature: gene Location: 78663-78902 bp Feature: domain Description: DUF1292 Location: 78717-78885 bp Feature: domain Description: DUF1 292 Location: 7871 7-78885 bp Feature: gene Location: 79278-79730 bp Feature: gene Location: 80488-82281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80782-81484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80782-81 484 bp Feature: domain Description: HNHc Note: nucleases Location: 82015-82147 bp Feature: domain Description: HNHc Note: nucleases Location: 8201 5-821 47 bp Feature: gene Location: 83215-85074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83524-84235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83524-84235 bp Feature: domain Description: HNHc Note: nucleases Location: 84847-84946 bp Feature: domain Description: HNHc Note: nucleases Location: 84847-84946 bp Feature: gene Location: 85080-85169 bp Feature: gene Location: 85592-86449 bp Feature: gene Location: 118480-118785 bp Feature: gene Location: 119039-120196 bp Feature: domain Description: dnaG Location: 119126-119567 bp Feature: domain Description: dnaG Location: 1 1 91 26-1 1 9567 bp Feature: gene Location: 120933-122807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121245-121953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 245-1 21 953 bp Feature: domain Description: GIIM Note: maturase Location: 122049-122250 bp Feature: domain Description: GIIM Note: maturase Location: 1 22049-1 22250 bp Feature: domain Description: HNHc Note: nucleases Location: 122559-122727 bp Feature: domain Description: HNHc Note: nucleases Location: 1 22559-1 22727 bp Feature: gene Location: 123214-123519 bp Feature: domain Description: SSB_OBF Location: 123226-123499 bp Feature: domain Description: SSB_OBF Location: 1 23226-1 23499 bp Feature: gene Location: 123542-124033 bp Feature: domain Description: PRK06751 Location: 123545-124031 bp Feature: domain Description: PRK06751 Location: 1 23545-1 24031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1292 (pfam06949), RVT-GII, HNHc (smart00507), dnaG (TIGR01391), GIIM (pfam08388), SSB_OBF (cd04496), PRK06751 (single-stranded DNA-binding protein; Provisional)

Seq: MBRJ01000040.1 Bacillus oceanisediminis strain Bhandara28 WS2TSB28_contig_45, whole genome shotgun sequence (197544 bp)
Overview 1 RT 1: 180339-195599 bp Neighborhood of RT #1 [180339, 195664] KOG0387 beta_clamp RVT-GII group_II_RT_mat HNHc COG4127 PRK08058 PRK05563 PRK05563 RVT-GII HNHc PRK05563 PRTRC_ThiF Feature: gene Location: 180339-182582 bp Feature: domain Description: KOG0387 Location: 180786-182388 bp Feature: domain Description: KOG0387 Location: 180786-182 388 bp Feature: gene Location: 182613-183512 bp Feature: domain Description: beta_clamp Location: 182637-183504 bp Feature: domain Description: beta_clamp Location: 182 637-183504 bp Feature: gene Location: 183703-185664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184003-184726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184003-18472 6 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 184861-185101 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 184861-185101 bp Feature: domain Description: HNHc Note: nucleases Location: 185395-185533 bp Feature: domain Description: HNHc Note: nucleases Location: 185395-185533 bp Feature: gene Location: 187064-187663 bp Feature: domain Description: COG4127 Location: 187082-187598 bp Feature: domain Description: COG412 7 Location: 187082 -187598 bp Feature: gene Location: 188202-189176 bp Feature: domain Description: PRK08058 Location: 188208-189153 bp Feature: domain Description: PRK08058 Location: 1882 08-189153 bp Feature: gene Location: 189671-189850 bp Feature: gene Location: 190072-191808 bp Feature: domain Description: PRK05563 Location: 190108-191116 bp Feature: domain Description: PRK05563 Location: 190108-191116 bp Feature: domain Description: PRK05563 Location: 191449-191803 bp Feature: domain Description: PRK05563 Location: 191449-191803 bp Feature: gene Location: 191878-193665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192175-192877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 175-192 877 bp Feature: domain Description: HNHc Note: nucleases Location: 193420-193555 bp Feature: domain Description: HNHc Note: nucleases Location: 19342 0-193555 bp Feature: gene Location: 194336-194749 bp Feature: domain Description: PRK05563 Location: 194339-194717 bp Feature: domain Description: PRK05563 Location: 194339-194717 bp Feature: gene Location: 194762-195664 bp Feature: domain Description: PRTRC_ThiF Location: 194810-195599 bp Feature: domain Description: PRTRC_ThiF Location: 194810-195599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), beta_clamp (cl29549), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), PRK08058 (DNA polymerase III subunit delta'; Validated), PRK05563 (DNA polymerase III subunits gamma and tau; Validated), PRTRC_ThiF (TIGR03736)

Seq: MBRJ01000066.1 Bacillus oceanisediminis strain Bhandara28 WS2TSB28_contig_69, whole genome shotgun sequence (14559 bp)
Overview 1 RT 1: 8799-13168 bp Neighborhood of RT #1 [8799, 13168] PRK05755 RVT-GII HNHc 5_3_exonuc_N Feature: gene Location: 8799-9005 bp Feature: gene Location: 9143-9655 bp Feature: domain Description: PRK05755 Location: 9146-9635 bp Feature: domain Description: PRK05755 Location: 9146-963 5 bp Feature: gene Location: 9853-11655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10147-10846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10147-10846 bp Feature: domain Description: HNHc Note: nucleases Location: 11404-11542 bp Feature: domain Description: HNHc Note: nucleases Location: 11404-11542 bp Feature: gene Location: 12379-12795 bp Feature: domain Description: 5_3_exonuc_N Location: 12451-12781 bp Feature: domain Description: 5_3 _exonuc_N Location: 12451-12781 bp Feature: gene Location: 12821-13168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5_3_exonuc_N (pfam02739), PRK05755 (DNA polymerase I; Provisional), RVT-GII, HNHc (smart00507)