myRT

myRT report for GCA_001856085.1_ASM185608v1

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Seq: MBQG01000032.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (8808 bp)
Overview 1 RT 1: 4242-7338 bp Neighborhood of RT #1 [4242, 8248] BaeS PRK06759 RVT-GII Feature: gene Location: 4242-5498 bp Ori: OHX55512.1 Feature: domain Description: BaeS Location: 4488-5487 bp Feature: domain Description: BaeS Location: 4488-5487 bp Feature: gene Location: 5604-6089 bp Ori: OHX55513.1 Feature: domain Description: PRK06759 Location: 5616-6066 bp Feature: domain Description: PRK06759 Location: 561 6-6066 bp Feature: gene Location: 6987-8248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7185-7338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 85-7338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), PRK06759 (RNA polymerase factor sigma-70; Validated), RVT-GII

Seq: MBQG01000046.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (24841 bp)
Overview 1 RT 1: 1037-8591 bp Neighborhood of RT #1 [1037, 8593] PRK13024 YrvD RVT-GII recJ PRK02304 Feature: gene Location: 1037-3306 bp Feature: domain Description: PRK13024 Location: 1052-1883 bp Feature: domain Description: PRK1302 4 Location: 1052 -1883 bp Feature: gene Location: 3389-3775 bp Ori: OHX54281.1 Feature: domain Description: YrvD Location: 3395-3620 bp Feature: domain Description: YrvD Location: 3395-362 0 bp Feature: gene Location: 3850-5111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4432 bp Feature: gene Location: 5749-8090 bp Feature: domain Description: recJ Location: 5833-7105 bp Feature: domain Description: recJ Location: 5833-7105 bp Feature: gene Location: 8081-8593 bp Ori: OHX54282.1 Feature: domain Description: PRK02304 Location: 8084-8591 bp Feature: domain Description: PRK02 304 Location: 8084-8591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13024 (bifunctional preprotein translocase subunit SecD/SecF; Reviewed), YrvD (COG5416), RVT-GII, recJ (TIGR00644), PRK02304 (adenine phosphoribosyltransferase; Provisional)

Seq: MBQG01000011.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (7507 bp)
Overview 1 RT 1: 1-3931 bp Neighborhood of RT #1 [1, 3931] ccpA RVT-GII PRK12595 Feature: gene Location: 1-181 bp Feature: domain Description: ccpA Location: 7-181 bp Feature: domain Description: ccpA Location: 7-181 bp Feature: gene Location: 496-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-13 12 bp Feature: gene Location: 2349-3434 bp Ori: OHX56601.1 Feature: domain Description: PRK12595 Location: 2355-3423 bp Feature: domain Description: PRK12595 Location: 23 55-3 423 bp Feature: gene Location: 3603-3931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ccpA (TIGR01481), RVT-GII, PRK12595 (bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed)

Seq: MBQG01000135.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (9940 bp)
Overview 1 RT 1: 4790-9940 bp Neighborhood of RT #1 [4790, 9940] RimL MFS_FsR RVT-GII GIIM integ_memb_HG Feature: gene Location: 4790-5356 bp Ori: OHX48570.1 Feature: domain Description: RimL Location: 4838-5348 bp Feature: domain Description: RimL Location: 4 838-534 8 bp Feature: gene Location: 5379-6590 bp Ori: OHX48571.1 Feature: domain Description: MFS_FsR Location: 5448-6549 bp Feature: domain Description: MFS_FsR Location: 54 4 8-654 9 bp Feature: gene Location: 6760-8022 bp Ori: OHX48572.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6958-7576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6958-7576 bp Feature: domain Description: GIIM Note: maturase Location: 7624-7834 bp Feature: domain Description: GIIM Note: maturase Location: 7624 -7834 bp Feature: gene Location: 8609-8881 bp Ori: OHX48573.1 Feature: domain Description: integ_memb_HG Location: 8612-8852 bp Feature: domain Description: integ_memb_HG Location: 8612-8852 bp Feature: gene Location: 9078-9940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), MFS_FsR (cd17478), RVT-GII, GIIM (pfam08388), integ_memb_HG (TIGR03954)

Seq: MBQG01000027.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (2118 bp)
Overview 1 RT 1: 1-1444 bp Neighborhood of RT #1 [1, 2089] RVT-GII Feature: gene Location: 1-236 bp Feature: gene Location: 829-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MBQG01000077.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (11092 bp)
Overview 1 RT 1: 4821-10784 bp Neighborhood of RT #1 [4821, 10876] organ_hyd_perox PRK07708 RVT-GII GIIM HTH_XRE Peptidases_S8_Subtilisin_subset Feature: gene Location: 4821-5240 bp Ori: OHX52089.1 Feature: domain Description: organ_hyd_perox Location: 4833-5232 bp Feature: domain Description: organ_hyd_perox Location: 4833-5232 bp Feature: gene Location: 5417-6076 bp Ori: OHX52090.1 Feature: domain Description: PRK07708 Location: 5420-6068 bp Feature: domain Description: PRK07708 Location: 5420-6 06 8 bp Feature: gene Location: 6261-7523 bp Ori: OHX52091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6459-7077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 459-7077 bp Feature: domain Description: GIIM Note: maturase Location: 7125-7335 bp Feature: domain Description: GIIM Note: maturase Location: 7125-7335 bp Feature: gene Location: 8294-9523 bp Ori: OHX52092.1 Feature: domain Description: HTH_XRE Location: 8306-8459 bp Feature: domain Description: HTH_XRE Location: 8306 -8459 bp Feature: gene Location: 9614-10876 bp Ori: OHX52093.1 Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 10028-10784 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 10028-10784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT organ_hyd_perox (TIGR03561), PRK07708 (hypothetical protein; Validated), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), Peptidases_S8_Subtilisin_subset (cd07477)

Seq: MBQG01000080.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (27366 bp)
Overview 1 RT 1: 11446-16185 bp Neighborhood of RT #1 [11446, 16873] ispG YqfW RVT-GII GIIM Fur ZnuB Feature: gene Location: 11446-12566 bp Feature: domain Description: ispG Location: 11452-12349 bp Feature: domain Description: ispG Location: 11452-12349 bp Feature: gene Location: 12579-13174 bp Feature: domain Description: YqfW Location: 12588-12726 bp Feature: domain Description: YqfW Location: 12588-127 26 bp Feature: gene Location: 14094-15356 bp Ori: OHX51913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14292-14910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14292-14910 bp Feature: domain Description: GIIM Note: maturase Location: 14958-15168 bp Feature: domain Description: GIIM Note: maturase Location: 14958-15168 bp Feature: gene Location: 15614-16024 bp Ori: OHX51914.1 Feature: domain Description: Fur Location: 15620-16022 bp Feature: domain Description: Fur Location: 15620-16022 bp Feature: gene Location: 16041-16873 bp Feature: domain Description: ZnuB Location: 16047-16185 bp Feature: domain Description: ZnuB Location: 16047 -16185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispG (PRK00366), YqfW (COG5663), RVT-GII, GIIM (pfam08388), Fur (COG0735), ZnuB (COG1108)

Seq: MBQG01000069.1 Planococcus salinarum strain DSM 23820, whole genome shotgun sequence (28996 bp)
Overview 1 RT 1: 461-1275 bp Neighborhood of RT #1 [461, 1720] group_II_RT_mat RVT-GII Feature: gene Location: 461-709 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 494-653 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 494-653 bp Feature: gene Location: 810-1720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816-1275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 16-1275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII