myRT

myRT report for GCA_001857155.1_ASM185715v1

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Seq: MIOU01000247.1 Vibrio cholerae strain VC53 NODE_9_length_124654_cov_241.956_ID_17, whole genome shotgun sequence (124654 bp)
Overview 1 RT 1: 23748-29934 bp Neighborhood of RT #1 [23748, 29936] RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 23748-24308 bp Feature: gene Location: 24346-24549 bp Feature: gene Location: 25165-26835 bp Ori: OFI66066.1 Feature: domain Description: RVT_N Location: 25210-25453 bp Feature: domain Description: RVT_N Location: 2521 0-25453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25498-26143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25498-261 43 bp Feature: domain Description: GIIM Note: maturase Location: 26194-26428 bp Feature: domain Description: GIIM Note: maturase Location: 261 94-26428 bp Feature: domain Description: HNHc Note: nucleases Location: 26644-26806 bp Feature: domain Description: HNHc Note: nucleases Location: 26644-26806 bp Feature: gene Location: 27958-29592 bp Ori: OFI66067.1 Feature: domain Description: groEL Location: 27964-29587 bp Feature: domain Description: groEL Location: 27964-29587 bp Feature: gene Location: 29646-29936 bp Ori: OFI66068.1 Gene: groES Feature: domain Description: groES Location: 29649-29934 bp Feature: domain Description: groES Location: 29649-29934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: MIOU01000218.1 Vibrio cholerae strain VC53 NODE_75_length_3505_cov_171.649_ID_149, whole genome shotgun sequence (3505 bp)
Overview 1 RT 1: 149-2683 bp Neighborhood of RT #1 [149, 3453] DUF3800 RVT-UG12 Feature: gene Location: 149-1273 bp Ori: OFI67315.1 Feature: domain Description: DUF3800 Location: 155-1064 bp Feature: domain Description: DUF3800 Location: 155-1064 bp Feature: gene Location: 1897-3453 bp Ori: OFI67316.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2239-2683 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2 2 39-2 683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-UG12