myRT

myRT report for GCA_001857485.1_ASM185748v1

Download annotations/find similar RTs

Seq: MIPK01000179.1 Vibrio cholerae strain TP NODE_31_length_7650_cov_191.597_ID_61, whole genome shotgun sequence (7650 bp)
Overview 1 RT 1: 125-5461 bp Neighborhood of RT #1 [125, 5475] KOG3216 PEGA RVT-Retrons TIR_2 DUF3709 DUF3709 HNHc Feature: gene Location: 125-613 bp Ori: OFJ29155.1 Feature: domain Description: KOG3216 Location: 128-605 bp Feature: domain Description: KOG321 6 Location: 1 28-605 bp Feature: gene Location: 1748-2125 bp Ori: OFJ29156.1 Feature: domain Description: PEGA Location: 1829-1955 bp Feature: domain Description: PEGA Location: 1 829-1 955 bp Feature: gene Location: 2567-4162 bp Ori: OFJ29157.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2819-3431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 281 9-3431 bp Feature: domain Description: TIR_2 Location: 3767-4151 bp Feature: domain Description: TIR_2 Location: 3767-41 51 bp Feature: gene Location: 4364-4642 bp Ori: OFJ29158.1 Feature: domain Description: DUF3709 Location: 4382-4418 bp Feature: domain Description: DUF3709 Location: 4382-441 8 bp Feature: domain Description: DUF3709 Location: 4511-4607 bp Feature: domain Description: DUF3709 Location: 451 1 -4607 bp Feature: gene Location: 4912-5475 bp Ori: OFJ29159.1 Feature: domain Description: HNHc Note: nucleases Location: 5305-5461 bp Feature: domain Description: HNHc Note: nucleases Location: 5305-5461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3216 (KOG3216, Diamine acetyltransferase ), PEGA (pfam08308), RVT-Retrons, TIR_2 (pfam13676), DUF3709 (pfam12493), HNHc (smart00507)

Seq: MIPK01000232.1 Vibrio cholerae strain TP NODE_3_length_356688_cov_164.191_ID_5, whole genome shotgun sequence (356688 bp)
Overview 1 RT 1: 171625-181177 bp Neighborhood of RT #1 [171625, 181920] RMtype1_S_EcoUTORF5051P-TRD2-CR2_like RMtype1_S_EcoUTORF5051P-TRD2-CR2_like DUF4145 HsdR RVT-UG1 TniQ Feature: gene Location: 171625-172797 bp Ori: OFJ27715.1 Feature: domain Description: RMtype1_S_EcoUTORF5051P-TRD2-CR2_like Location: 171637-172162 bp Feature: domain Description: RMtype1_S_EcoUTORF5051P-TRD2 -CR2 _like Location: 171637-172 162 bp Feature: domain Description: RMtype1_S_EcoUTORF5051P-TRD2-CR2_like Location: 172210-172771 bp Feature: domain Description: RMtype1_S_EcoUTORF5051P-TRD2 -CR2 _like Location: 172 2 10-172 771 bp Feature: gene Location: 172837-176451 bp Ori: OFJ27716.1 Feature: domain Description: DUF4145 Location: 172963-173242 bp Feature: domain Description: DUF4145 Location: 172 963-1732 42 bp Feature: domain Description: HsdR Location: 173548-176374 bp Feature: domain Description: HsdR Location: 173548-176374 bp Feature: gene Location: 176463-180152 bp Ori: OFJ27717.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 177075-177591 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 177075-177591 bp Feature: gene Location: 180161-180571 bp Feature: gene Location: 180709-181920 bp Ori: OFJ27718.1 Feature: domain Description: TniQ Location: 180724-181177 bp Feature: domain Description: TniQ Location: 18072 4-181177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_EcoUTORF5051P-TRD2-CR2_like (cd17524), DUF4145 (pfam13643), HsdR (COG4096), RVT-UG1, TniQ (pfam06527)