myRT

myRT report for GCA_001857665.2_ASM185766v2

Download annotations/find similar RTs

Seq: LVZL01000055.1 Acidithiobacillus ferrivorans strain PQ33 Aferri_contig000055, whole genome shotgun sequence (163598 bp)
Overview 1 RT 1: 160942-163066 bp Neighborhood of RT #1 [160942, 163167] PRK14507 RVT-GII GIIM Feature: gene Location: 160942-161211 bp Ori: OFA16263.1 Feature: domain Description: PRK14507 Location: 160972-161176 bp Feature: domain Description: PRK1 4507 Location: 1 60972-1 61 1 76 bp Feature: gene Location: 161222-161416 bp Feature: gene Location: 161830-163167 bp Ori: OFA16265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162181-162802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 621 81 -1 62802 bp Feature: domain Description: GIIM Note: maturase Location: 162850-163066 bp Feature: domain Description: GIIM Note: maturase Location: 1 62850-1 63066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14507 (malto-oligosyltrehalose synthase), RVT-GII, GIIM (pfam08388)

Seq: LVZL01000013.1 Acidithiobacillus ferrivorans strain PQ33 Aferri_contig000013, whole genome shotgun sequence (22959 bp)
Overview 1 RT 1: 9477-15589 bp Neighborhood of RT #1 [9477, 15666] COG5001 KOG0409 RVT-GII ExeA MFS_LmrB_MDR_like Feature: gene Location: 9477-9749 bp Feature: gene Location: 11002-12801 bp Feature: domain Description: COG5001 Location: 11134-12412 bp Feature: domain Description: COG5001 Location: 11134-12 412 bp Feature: gene Location: 12927-13256 bp Ori: OFA17190.1 Feature: domain Description: KOG0409 Location: 12969-13095 bp Feature: domain Description: KOG0409 Location: 12 969-13095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13098-13218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13098-132 18 bp Feature: gene Location: 13563-13898 bp Feature: domain Description: ExeA Location: 13590-13863 bp Feature: domain Description: ExeA Location: 13590-13863 bp Feature: gene Location: 14137-15666 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 14221-15589 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 142 2 1-15589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ), KOG0409 (KOG0409, Predicted dehydrogenase ), RVT-GII, ExeA (COG3267), MFS_LmrB_MDR_like (cd17503)

Seq: LVZL01000086.1 Acidithiobacillus ferrivorans strain PQ33 Aferri_contig000086, whole genome shotgun sequence (73751 bp)
Overview 1 RT 1: 1-3942 bp Neighborhood of RT #1 [1, 3959] HTH_Tnp_1 COG3547 RVT-GII GIIM HicB Feature: gene Location: 1-227 bp Feature: domain Description: HTH_Tnp_1 Location: 7-166 bp Feature: domain Description: HTH_Tnp_1 Location: 7-166 bp Feature: gene Location: 534-1502 bp Ori: OFA15314.1 Feature: domain Description: COG3547 Location: 558-1371 bp Feature: domain Description: COG3 547 Location: 558-13 71 bp Feature: gene Location: 1612-2952 bp Ori: OFA15315.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-2539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-253 9 bp Feature: domain Description: GIIM Note: maturase Location: 2587-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2587-2812 bp Feature: gene Location: 3061-3672 bp Feature: gene Location: 3750-3959 bp Ori: OFA15317.1 Feature: domain Description: HicB Location: 3753-3942 bp Feature: domain Description: HicB Location: 3 753 -3 942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), HicB (pfam05534)