myRT

myRT report for GCA_001858025.1_ASM185802v1

Download annotations/find similar RTs

Seq: LZQD01000001.1 Trichormus sp. NMC-1 scaffold1, whole genome shotgun sequence (1580590 bp)
Overview 1 RT 1: 744733-751139 bp Neighborhood of RT #1 [744733, 751249] CcmA PLN02800 RVT-GII McrA CcmA PLN02800 RVT_N RVT-GII SLBB SLBB Wza Wza GT4_AviGT4-like Feature: gene Location: 744733-745710 bp Feature: domain Description: CcmA Location: 744787-745684 bp Feature: domain Description: CcmA Location: 744787-745684 bp Feature: gene Location: 745842-746438 bp Feature: domain Description: PLN02800 Location: 745854-746436 bp Feature: domain Description: PLN02800 Location: 745854-746436 bp Feature: gene Location: 746622-747353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746625-746769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746625-746769 bp Feature: domain Description: McrA Location: 747000-747342 bp Feature: domain Description: McrA Location: 747000-747342 bp Feature: gene Location: 747451-748212 bp Feature: domain Description: CcmA Location: 747505-748189 bp Feature: domain Description: CcmA Location: 747505-7481 89 bp Feature: gene Location: 748344-748535 bp Feature: domain Description: PLN02800 Location: 748347-748533 bp Feature: domain Description: PLN02800 Location: 748347-748533 bp Feature: gene Location: 748525-750207 bp Feature: domain Description: RVT_N Location: 748561-748798 bp Feature: domain Description: RVT_N Location: 748561 -748798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748858-749197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748858-7491 97 bp Feature: domain Description: SLBB Location: 749206-749248 bp Feature: domain Description: SLBB Location: 749206-749248 bp Feature: domain Description: SLBB Location: 749296-749374 bp Feature: domain Description: SLBB Location: 749296-749374 bp Feature: domain Description: Wza Location: 749548-749854 bp Feature: domain Description: Wza Location: 749548-749854 bp Feature: domain Description: Wza Location: 749905-750166 bp Feature: domain Description: Wza Location: 749905-7501 66 bp Feature: gene Location: 750299-750517 bp Feature: gene Location: 750545-751249 bp Feature: domain Description: GT4_AviGT4-like Location: 750551-751139 bp Feature: domain Description: GT4_AviGT4-like Location: 750551 -751 1 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), PLN02800 (imidazoleglycerol-phosphate dehydratase), RVT-GII, McrA (COG4058), RVT_N (pfam13655), SLBB (pfam10531), Wza (COG1596), GT4_AviGT4-like (cd03802)

Seq: LZQD01000011.1 Trichormus sp. NMC-1 scaffold11, whole genome shotgun sequence (169692 bp)
Overview 1 RT 1: 127649-131525 bp Neighborhood of RT #1 [127649, 131525] RVT-Retrons Feature: gene Location: 127649-128041 bp Feature: gene Location: 128067-128966 bp Feature: gene Location: 128986-130119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129160-129766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 9160-12 9766 bp Feature: gene Location: 130456-131055 bp Feature: gene Location: 131247-131525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LZQD01000012.1 Trichormus sp. NMC-1 scaffold12, whole genome shotgun sequence (128698 bp)
Overview 1 RT 1: 301-3236 bp Neighborhood of RT #1 [301, 3236] RVT_N RVT-GII McrA COG3650 Feature: gene Location: 301-1941 bp Feature: domain Description: RVT_N Location: 337-583 bp Feature: domain Description: RVT_N Location: 3 3 7-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634-1291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 4-1291 bp Feature: domain Description: McrA Location: 1525-1873 bp Feature: domain Description: McrA Location: 1525-1873 bp Feature: gene Location: 2278-2718 bp Feature: domain Description: COG3650 Location: 2323-2716 bp Feature: domain Description: COG3 650 Location: 23 23 -2716 bp Feature: gene Location: 2856-3236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), COG3650 (Uncharacterized membrane protein )

Seq: LZQD01000002.1 Trichormus sp. NMC-1 scaffold2, whole genome shotgun sequence (1051452 bp)
Overview 1 RT 1: 948051-952211 bp Neighborhood of RT #1 [948051, 952237] DUF4870 PRK09283 RVT-UG16 HTH_XRE Feature: gene Location: 948051-948410 bp Feature: domain Description: DUF4870 Location: 948075-948408 bp Feature: domain Description: DUF4 870 Location: 94 8075-94 84 08 bp Feature: gene Location: 948683-949660 bp Feature: domain Description: PRK09283 Location: 948689-949658 bp Feature: domain Description: PRK09283 Location: 94 8689-94 9658 bp Feature: gene Location: 949815-951302 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 950193-950595 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 950193-950595 bp Feature: gene Location: 951402-951854 bp Feature: gene Location: 952025-952237 bp Feature: domain Description: HTH_XRE Location: 952046-952211 bp Feature: domain Description: HTH_XRE Location: 95204 6-952211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), PRK09283 (porphobilinogen synthase), RVT-UG16, HTH_XRE (smart00530)

Seq: LZQD01000003.1 Trichormus sp. NMC-1 scaffold3, whole genome shotgun sequence (566878 bp)
Overview 1 RT 1: 564644-566772 bp Neighborhood of RT #1 [564644, 566876] RVT_N RVT-GII GIIM Feature: gene Location: 564644-564784 bp Feature: gene Location: 565166-565720 bp Feature: gene Location: 565728-566876 bp Feature: domain Description: RVT_N Location: 565731-565809 bp Feature: domain Description: RVT_N Location: 5 65 731-5 65 809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565860-566517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 65 860-5 665 17 bp Feature: domain Description: GIIM Note: maturase Location: 566574-566772 bp Feature: domain Description: GIIM Note: maturase Location: 5 665 74-5 66772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LZQD01000005.1 Trichormus sp. NMC-1 scaffold5, whole genome shotgun sequence (432369 bp)
Overview 1 RT 1: 237600-244460 bp Neighborhood of RT #1 [237600, 244537] YfmG Avd_like RVT-DGRs His_Phos_1 CcmA Feature: gene Location: 237600-240764 bp Feature: domain Description: YfmG Location: 239916-240744 bp Feature: domain Description: YfmG Location: 239916 -240744 bp Feature: gene Location: 241087-241440 bp Feature: domain Description: Avd_like Location: 241105-241411 bp Feature: domain Description: Avd_like Location: 241105-241411 bp Feature: gene Location: 241645-242394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241849-242386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241849-242386 bp Feature: gene Location: 242656-243342 bp Feature: domain Description: His_Phos_1 Location: 242719-243298 bp Feature: domain Description: His_Phos_1 Location: 242719-243298 bp Feature: gene Location: 243518-244537 bp Feature: domain Description: CcmA Location: 243527-244460 bp Feature: domain Description: CcmA Location: 243527-24446 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, His_Phos_1 (pfam00300), CcmA (COG4133)