myRT

myRT report for GCA_001860215.1_ASM186021v1

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Seq: MBFE01000018.1 Agrobacterium vitis strain T1/7 contig21, whole genome shotgun sequence (6896 bp)
Overview 1 RT 1: 126-2503 bp Neighborhood of RT #1 [126, 2696] RVT-GII GIIM PHA02517 COG3920 Feature: gene Location: 126-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29-474 bp Feature: domain Description: GIIM Note: maturase Location: 546-732 bp Feature: domain Description: GIIM Note: maturase Location: 546-732 bp Feature: gene Location: 1067-1568 bp Feature: domain Description: PHA02517 Location: 1136-1373 bp Feature: domain Description: PHA0251 7 Location: 1 1 36-1 373 bp Feature: gene Location: 1654-2696 bp Feature: domain Description: COG3920 Location: 2089-2503 bp Feature: domain Description: COG3920 Location: 2089-2503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3920 (Two-component sensor histidine kinase, HisKA and HATPase domains )

Seq: MBFE01000026.1 Agrobacterium vitis strain T1/7 contig29, whole genome shotgun sequence (11387 bp)
Overview 1 RT 1: 33-2383 bp Neighborhood of RT #1 [33, 2412] RVT-GII KOG4768 PHA02517 PHA02517 COG3547 Feature: gene Location: 33-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-52 8 bp Feature: domain Description: KOG4768 Location: 660-810 bp Feature: domain Description: KOG4768 Location: 660-810 bp Feature: gene Location: 1122-1604 bp Feature: domain Description: PHA02517 Location: 1128-1218 bp Feature: domain Description: PHA02 517 Location: 112 8-12 18 bp Feature: domain Description: PHA02517 Location: 1446-1602 bp Feature: domain Description: PHA02 517 Location: 1446-1602 bp Feature: gene Location: 1930-2412 bp Ori: OHZ45402.1 Feature: domain Description: COG3547 Location: 1972-2383 bp Feature: domain Description: COG3547 Location: 1972 -2 383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: MBFE01000084.1 Agrobacterium vitis strain T1/7 contig81, whole genome shotgun sequence (12389 bp)
Overview 1 RT 1: 10059-12122 bp Neighborhood of RT #1 [10059, 12121] InsE PHA02517 RVT-GII Feature: gene Location: 10059-10388 bp Ori: OHZ38961.1 Feature: domain Description: InsE Location: 10065-10377 bp Feature: domain Description: InsE Location: 10065-103 77 bp Feature: gene Location: 10385-10810 bp Feature: domain Description: PHA02517 Location: 10451-10805 bp Feature: domain Description: PHA02517 Location: 10451-10805 bp Feature: gene Location: 11462-12121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11720-12122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11720-12122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: MBFE01000048.1 Agrobacterium vitis strain T1/7 contig49, whole genome shotgun sequence (36929 bp)
Overview 1 RT 1: 5319-9663 bp Neighborhood of RT #1 [5319, 9692] OafA RVT-Retrons HTH_XRE PinE Feature: gene Location: 5319-6533 bp Ori: OHZ44409.1 Feature: domain Description: OafA Location: 5403-6516 bp Feature: domain Description: OafA Location: 54 03-6516 bp Feature: gene Location: 6641-6877 bp Feature: gene Location: 7020-8063 bp Ori: OHZ44411.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7200-7707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7200-7707 bp Feature: gene Location: 8053-8355 bp Ori: OHZ44442.1 Feature: domain Description: HTH_XRE Location: 8068-8230 bp Feature: domain Description: HTH_XRE Location: 8068-8230 bp Feature: gene Location: 9111-9692 bp Ori: OHZ44412.1 Feature: domain Description: PinE Location: 9120-9663 bp Feature: domain Description: PinE Location: 9120-9663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), RVT-Retrons, HTH_XRE (smart00530), PinE (COG1961)