myRT

myRT report for GCA_001860215.2_T1-7_v2

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Seq: MBFE02000036.1 Agrobacterium vitis strain T1/7 NODE_36_length_36848_cov_12.952343, whole genome shotgun sequence (36848 bp)
Overview 1 RT 1: 5238-9582 bp Neighborhood of RT #1 [5238, 9611] OafA HTH_37 RVT-Retrons HTH_XRE PinE Feature: gene Location: 5238-6452 bp Ori: MUO45405.1 Feature: domain Description: OafA Location: 5322-6435 bp Feature: domain Description: OafA Location: 5322-6435 bp Feature: gene Location: 6623-6937 bp Ori: MUO45406.1 Feature: domain Description: HTH_37 Location: 6725-6902 bp Feature: domain Description: HTH_37 Location: 6725-6902 bp Feature: gene Location: 6939-7982 bp Ori: MUO45407.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7119-7626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 1 9-7626 bp Feature: gene Location: 7972-8295 bp Ori: MUO45408.1 Feature: domain Description: HTH_XRE Location: 8008-8170 bp Feature: domain Description: HTH_XRE Location: 8008-81 70 bp Feature: gene Location: 9030-9611 bp Ori: MUO45409.1 Feature: domain Description: PinE Location: 9039-9582 bp Feature: domain Description: PinE Location: 9039-9582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), HTH_37 (pfam13744), RVT-Retrons, HTH_XRE (smart00530), PinE (COG1961)

Seq: MBFE02000046.1 Agrobacterium vitis strain T1/7 NODE_46_length_12269_cov_19.346154, whole genome shotgun sequence (12269 bp)
Overview 1 RT 1: 8255-12065 bp Neighborhood of RT #1 [8255, 12067] RolB_RolC InsE RVT-GII Feature: gene Location: 8255-8875 bp Ori: MUO45637.1 Feature: domain Description: RolB_RolC Location: 8258-8861 bp Feature: domain Description: RolB_RolC Location: 82 58-8861 bp Feature: gene Location: 10011-10762 bp Feature: domain Description: InsE Location: 10017-10329 bp Feature: domain Description: InsE Location: 10017-1032 9 bp Feature: gene Location: 11414-12067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672-12065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672 -12 065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RolB_RolC (pfam02027), InsE (COG2963), RVT-GII

Seq: MBFE02000049.1 Agrobacterium vitis strain T1/7 NODE_49_length_10450_cov_20.213988, whole genome shotgun sequence (10450 bp)
Overview 1 RT 1: 8066-10017 bp Neighborhood of RT #1 [8066, 10238] COG3547 PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 8066-8521 bp Feature: domain Description: COG3547 Location: 8102-8492 bp Feature: domain Description: COG3 547 Location: 8102-8492 bp Feature: gene Location: 8847-9329 bp Feature: domain Description: PHA02517 Location: 8853-8943 bp Feature: domain Description: PHA02517 Location: 8853 -8943 bp Feature: domain Description: PHA02517 Location: 9171-9327 bp Feature: domain Description: PHA02517 Location: 9171-93 27 bp Feature: gene Location: 9402-10238 bp Ori: MUO45657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9405-9717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9405-9717 bp Feature: domain Description: GIIM Note: maturase Location: 9789-10017 bp Feature: domain Description: GIIM Note: maturase Location: 9789-10017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MBFE02000055.1 Agrobacterium vitis strain T1/7 NODE_55_length_6895_cov_9.811170, whole genome shotgun sequence (6895 bp)
Overview 1 RT 1: 4200-6508 bp Neighborhood of RT #1 [4200, 6770] COG3920 PHA02517 RVT-GII GIIM Feature: gene Location: 4200-5362 bp Feature: domain Description: COG3920 Location: 4635-5049 bp Feature: domain Description: COG3920 Location: 4 635-504 9 bp Feature: gene Location: 5328-5763 bp Feature: domain Description: PHA02517 Location: 5334-5568 bp Feature: domain Description: PHA02517 Location: 5334 -5568 bp Feature: gene Location: 5902-6770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905-6250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905-6250 bp Feature: domain Description: GIIM Note: maturase Location: 6322-6508 bp Feature: domain Description: GIIM Note: maturase Location: 6322-6508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3920 (Two-component sensor histidine kinase, HisKA and HATPase domains ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)