myRT

myRT report for GCA_001865985.1_ASM186598v1

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Seq: MIIJ01000023.1 Escherichia coli strain B-11870 B11870_contig3, whole genome shotgun sequence (109292 bp)
Overview 1 RT 1: 64-2921 bp 2 RT 2: 21163-26223 bp Neighborhood of RT #1 [64, 2921] PHA02517 RVT-GII GIIM Neighborhood of RT #2 [21163, 26234] SEF14_adhesin YjiK RVT-GII GIIM PRK15185 Tra5 Feature: gene Location: 64-204 bp Feature: gene Location: 170-556 bp Ori: OII96442.1 Feature: domain Description: PHA02517 Location: 173-554 bp Feature: domain Description: PHA0251 7 Location: 1 73-554 bp Feature: gene Location: 733-2241 bp Ori: OII96552.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991-1723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991 -1 723 bp Feature: domain Description: GIIM Note: maturase Location: 1798-1996 bp Feature: domain Description: GIIM Note: maturase Location: 1 798-1 996 bp Feature: gene Location: 2210-2635 bp Feature: gene Location: 2550-2921 bp Feature: gene Location: 21163-21648 bp Ori: OII96461.1 Feature: domain Description: SEF14_adhesin Location: 21187-21424 bp Feature: domain Description: SEF1 4_adhesin Location: 21 1 87-21 424 bp Feature: gene Location: 22085-22501 bp Ori: OII96462.1 Feature: domain Description: YjiK Location: 22103-22496 bp Feature: domain Description: YjiK Location: 221 03-22496 bp Feature: gene Location: 22679-24067 bp Ori: OII96463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23009-23627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23009-23627 bp Feature: domain Description: GIIM Note: maturase Location: 23675-23906 bp Feature: domain Description: GIIM Note: maturase Location: 23675-23906 bp Feature: gene Location: 24625-25416 bp Ori: OII96464.1 Feature: domain Description: PRK15185 Location: 25021-25393 bp Feature: domain Description: PRK1 51 85 Location: 25021 -25393 bp Feature: gene Location: 25692-26234 bp Feature: domain Description: Tra5 Location: 25749-26223 bp Feature: domain Description: Tra5 Location: 25749-26223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), SEF14_adhesin (pfam06443), YjiK (COG3204), PRK15185 (transcriptional regulator HilD; Provisional), Tra5 (COG2801)

Seq: MIIJ01000031.1 Escherichia coli strain B-11870 B11870_contig37, whole genome shotgun sequence (542977 bp)
Overview 1 RT 1: 525230-531719 bp Neighborhood of RT #1 [525230, 531727] Phage_GPA RVT-Retrons Q Feature: gene Location: 525230-527518 bp Ori: OII95607.1 Feature: domain Description: Phage_GPA Location: 525629-526616 bp Feature: domain Description: Phage_GPA Location: 52 562 9-52 6616 bp Feature: gene Location: 527823-528116 bp Feature: gene Location: 528439-529389 bp Ori: OII95609.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 528622-529156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 862 2 -52 9156 bp Feature: gene Location: 529555-530355 bp Feature: gene Location: 530693-531727 bp Ori: OII95611.1 Feature: domain Description: Q Location: 530696-531719 bp Feature: domain Description: Q Location: 530696-531719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-Retrons, Q (PHA02536)