myRT

myRT report for GCA_001868735.1_BE_33

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Seq: MOXO01000427.1 Bradyrhizobium elkanii strain TnphoA33 be33_427, whole genome shotgun sequence (6119 bp)
Overview 1 RT 1: 1174-6119 bp Neighborhood of RT #1 [1174, 6119] DUF772 RVT-GII RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 1174-1362 bp Feature: gene Location: 1579-1887 bp Ori: OIM89382.1 Feature: domain Description: DUF772 Location: 1735-1846 bp Feature: domain Description: DUF772 Location: 1 735-1 846 bp Feature: gene Location: 2327-3054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531-3014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531 -301 4 bp Feature: gene Location: 3565-4815 bp Ori: OIM89383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3769-4426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3769-4426 bp Feature: domain Description: GIIM Note: maturase Location: 4507-4729 bp Feature: domain Description: GIIM Note: maturase Location: 4507-4729 bp Feature: gene Location: 4889-5452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4895-5066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4895-5066 bp Feature: domain Description: GIIM Note: maturase Location: 5144-5372 bp Feature: domain Description: GIIM Note: maturase Location: 51 44-5372 bp Feature: gene Location: 5529-6119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: MOXO01000682.1 Bradyrhizobium elkanii strain TnphoA33 be33_682, whole genome shotgun sequence (1828 bp)
Overview 1 RT 1: 82-1288 bp Neighborhood of RT #1 [82, 1458] RVT-GII GIIM Feature: gene Location: 82-1458 bp Ori: OIM88639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-102 7 bp Feature: domain Description: GIIM Note: maturase Location: 1078-1288 bp Feature: domain Description: GIIM Note: maturase Location: 1078-12 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOXO01000291.1 Bradyrhizobium elkanii strain TnphoA33 be33_291, whole genome shotgun sequence (10505 bp)
Overview 1 RT 1: 1-3924 bp Neighborhood of RT #1 [1, 3986] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 1-625 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13-265 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13 -265 bp Feature: gene Location: 774-2105 bp Ori: OIM90245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-1731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-173 1 bp Feature: domain Description: GIIM Note: maturase Location: 1797-2019 bp Feature: domain Description: GIIM Note: maturase Location: 1797-2019 bp Feature: gene Location: 2038-2874 bp Ori: OIM90251.1 Feature: domain Description: LomR Location: 2074-2785 bp Feature: domain Description: LomR Location: 2074-2785 bp Feature: gene Location: 3318-3986 bp Ori: OIM90246.1 Feature: domain Description: PHA02518 Location: 3327-3924 bp Feature: domain Description: PHA02518 Location: 3 3 27-3 924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: MOXO01000571.1 Bradyrhizobium elkanii strain TnphoA33 be33_571, whole genome shotgun sequence (3107 bp)
Overview 1 RT 1: 57-3107 bp Neighborhood of RT #1 [57, 3107] RVT-GII COG3547 Feature: gene Location: 57-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576-1269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576-1269 bp Feature: gene Location: 1710-2770 bp Feature: domain Description: COG3547 Location: 1827-2667 bp Feature: domain Description: COG354 7 Location: 1827-2667 bp Feature: gene Location: 2870-3107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: MOXO01000013.1 Bradyrhizobium elkanii strain TnphoA33 be33_13, whole genome shotgun sequence (64652 bp)
Overview 1 RT 1: 2068-7859 bp Neighborhood of RT #1 [2068, 8959] UbiE RVT-Retrons Trypsin_2 Piwi_piwi-like_ProArk SIR2 Feature: gene Location: 2068-2706 bp Ori: OIM95583.1 Feature: domain Description: UbiE Location: 2089-2503 bp Feature: domain Description: UbiE Location: 2089-25 03 bp Feature: gene Location: 2760-3125 bp Feature: gene Location: 4119-5717 bp Ori: OIM95585.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4281-4878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4281-4878 bp Feature: domain Description: Trypsin_2 Location: 5235-5637 bp Feature: domain Description: Trypsin_2 Location: 5 235 -5 637 bp Feature: gene Location: 5799-7220 bp Ori: OIM95586.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 5844-7176 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 5 844-7176 bp Feature: gene Location: 7217-8959 bp Ori: OIM95587.1 Feature: domain Description: SIR2 Location: 7292-7859 bp Feature: domain Description: SIR2 Location: 7292-785 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-Retrons, Trypsin_2 (pfam13365), Piwi_piwi-like_ProArk (cd04659), SIR2 (pfam02146)

Seq: MOXO01000531.1 Bradyrhizobium elkanii strain TnphoA33 be33_531, whole genome shotgun sequence (3546 bp)
Overview 1 RT 1: 569-3442 bp Neighborhood of RT #1 [569, 3516] PepP RVT-GII GIIM Feature: gene Location: 569-1789 bp Ori: OIM88970.1 Feature: domain Description: PepP Location: 614-1754 bp Feature: domain Description: PepP Location: 6 14-1754 bp Feature: gene Location: 1786-2130 bp Feature: gene Location: 2872-3516 bp Ori: OIM88972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875-3136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875-3136 bp Feature: domain Description: GIIM Note: maturase Location: 3217-3442 bp Feature: domain Description: GIIM Note: maturase Location: 3217-3442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepP (COG0006), RVT-GII, GIIM (pfam08388)

Seq: MOXO01000367.1 Bradyrhizobium elkanii strain TnphoA33 be33_367, whole genome shotgun sequence (7501 bp)
Overview 1 RT 1: 3426-7325 bp Neighborhood of RT #1 [3426, 7324] ygfB_yecA DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 3426-3726 bp Feature: domain Description: ygfB_yecA Location: 3450-3720 bp Feature: domain Description: ygfB_yecA Location: 3450-37 20 bp Feature: gene Location: 3756-3986 bp Ori: OIM89708.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3825-3942 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3825-3942 bp Feature: gene Location: 4884-5861 bp Ori: OIM89709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5487 bp Feature: domain Description: GIIM Note: maturase Location: 5559-5754 bp Feature: domain Description: GIIM Note: maturase Location: 5559-57 54 bp Feature: gene Location: 6029-7324 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6131-6353 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6131-6353 bp Feature: domain Description: zf-IS66 Location: 6386-6503 bp Feature: domain Description: zf-IS66 Location: 6386-6503 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6554-7325 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6554-7 325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ygfB_yecA (TIGR02292), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: MOXO01000606.1 Bradyrhizobium elkanii strain TnphoA33 be33_606, whole genome shotgun sequence (2721 bp)
Overview 1 RT 1: 573-2010 bp Neighborhood of RT #1 [573, 2387] RVT-GII RVT-GII RVT-GII Feature: gene Location: 573-902 bp Feature: gene Location: 909-1469 bp Ori: OIM88779.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1317-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1317-1395 bp Feature: gene Location: 1474-1668 bp Ori: OIM88780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1504-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1504-1657 bp Feature: gene Location: 1701-2387 bp Ori: OIM88781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1704-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1704-2010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII