myRT

myRT report for GCA_001870885.1_FAK_1

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Seq: JRXS01000006.1 Francisella sp. TX076608 KX00.Contig53, whole genome shotgun sequence (1985304 bp)
Overview 1 RT 1: 1181168-1187986 bp Neighborhood of RT #1 [1181168, 1187994] Ndh PRK10426 RVT-GII GIIM PRiA4_ORF3 PinE Feature: gene Location: 1181168-1182418 bp Feature: domain Description: Ndh Location: 1181177-1182368 bp Feature: domain Description: Ndh Location: 1 1 81 1 77-1 1 82368 bp Feature: gene Location: 1182544-1183659 bp Feature: domain Description: PRK10426 Location: 1182547-1183654 bp Feature: domain Description: PRK1 0426 Location: 1 1 82547-1 1 83654 bp Feature: gene Location: 1185439-1186674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185637-1186294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 85637-1 1 86294 bp Feature: domain Description: GIIM Note: maturase Location: 1186369-1186597 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 86369-1 1 86597 bp Feature: gene Location: 1186826-1187431 bp Feature: domain Description: PRiA4_ORF3 Location: 1186844-1187369 bp Feature: domain Description: PRiA4_ORF3 Location: 1 1 86844-1 1 87369 bp Feature: gene Location: 1187434-1187994 bp Feature: domain Description: PinE Location: 1187437-1187986 bp Feature: domain Description: PinE Location: 1 1 87437-1 1 87986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ndh (COG1252), PRK10426 (alpha-glucosidase; Provisional), RVT-GII, GIIM (pfam08388), PRiA4_ORF3 (pfam07929), PinE (COG1961)

Seq: JRXS01000005.1 Francisella sp. TX076608 KX00.Contig41, whole genome shotgun sequence (82739 bp)
Overview 1 RT 1: 28843-31925 bp 2 RT 2: 57713-62568 bp Neighborhood of RT #1 [28843, 32461] Rve RVT-GII GIIM DDE_Tnp_Tn3 DDE_Tnp_1_5 Neighborhood of RT #2 [57713, 62618] Rve RVT-GII GIIM RVT-GII GIIM DDE_Tnp_Tn3 DDE_Tnp_1_5 Feature: gene Location: 28843-29073 bp Feature: domain Description: Rve Location: 28864-29047 bp Feature: domain Description: Rve Location: 2 8864-2 9047 bp Feature: gene Location: 29172-29321 bp Feature: gene Location: 29617-30852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29815-30472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9815-30472 bp Feature: domain Description: GIIM Note: maturase Location: 30547-30775 bp Feature: domain Description: GIIM Note: maturase Location: 30547-30775 bp Feature: gene Location: 30934-31209 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 30952-31141 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 30952 -31141 bp Feature: gene Location: 31484-32461 bp Feature: domain Description: DDE_Tnp_1_5 Location: 31577-31925 bp Feature: domain Description: DDE_Tnp_1_5 Location: 31577-3192 5 bp Feature: gene Location: 57713-57943 bp Feature: domain Description: Rve Location: 57734-57917 bp Feature: domain Description: Rve Location: 57734-57917 bp Feature: gene Location: 58042-58191 bp Feature: gene Location: 58487-59722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58685-59342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58685-59342 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59645 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59645 bp Feature: gene Location: 59878-60027 bp Feature: gene Location: 60323-61558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60521-61178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6052 1-61178 bp Feature: domain Description: GIIM Note: maturase Location: 61253-61481 bp Feature: domain Description: GIIM Note: maturase Location: 612 53-61481 bp Feature: gene Location: 61640-61915 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 61658-61847 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 61658-61847 bp Feature: gene Location: 62190-62618 bp Feature: domain Description: DDE_Tnp_1_5 Location: 62283-62568 bp Feature: domain Description: DDE_Tnp_1_5 Location: 62 2 83-62 568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), DDE_Tnp_1_5 (pfam13737)

Seq: JRXS01000007.1 Francisella sp. TX076608 KX00.Contig59, whole genome shotgun sequence (95120 bp)
Overview 1 RT 1: 64863-70014 bp Neighborhood of RT #1 [64863, 70454] DDE_Tnp_1_5 PRiA4_ORF3 RVT-GII GIIM IS5 DDE_5 Feature: gene Location: 64863-65840 bp Feature: domain Description: DDE_Tnp_1_5 Location: 64956-65304 bp Feature: domain Description: DDE_Tnp_1_5 Location: 64956-653 04 bp Feature: gene Location: 65909-66514 bp Feature: domain Description: PRiA4_ORF3 Location: 65927-66452 bp Feature: domain Description: PRiA4_ORF3 Location: 65927-66452 bp Feature: gene Location: 66665-67900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66863-67520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66863 -67520 bp Feature: domain Description: GIIM Note: maturase Location: 67595-67823 bp Feature: domain Description: GIIM Note: maturase Location: 67595-67823 bp Feature: gene Location: 68675-68998 bp Feature: domain Description: IS5 Location: 68699-68993 bp Feature: domain Description: IS5 Location: 68699-68993 bp Feature: gene Location: 69432-70454 bp Feature: domain Description: DDE_5 Location: 69498-70014 bp Feature: domain Description: DDE_5 Location: 69498-70014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), PRiA4_ORF3 (pfam07929), RVT-GII, GIIM (pfam08388), IS5 (COG3039), DDE_5 (pfam13546)

Seq: JRXS01000004.1 Francisella sp. TX076608 KX00.Contig38, whole genome shotgun sequence (82910 bp)
Overview 1 RT 1: 1880-5427 bp 2 RT 2: 20841-25160 bp 3 RT 3: 34499-47343 bp Neighborhood of RT #1 [1880, 5522] IS5 RVT-GII GIIM BHL Neighborhood of RT #2 [20841, 25579] DDE_Tnp_1_5 PRiA4_ORF3 RVT-GII GIIM Glyco_hydro_18 Neighborhood of RT #3 [34499, 47348] Transposase_31 YadD RVT-GII GIIM PRiA4_ORF3 PinE HTH_Tnp_1 PHA02517 DUF4158 DDE_Tnp_Tn3 RVT-GII GIIM RVT-GII GIIM InsE Feature: gene Location: 1880-2203 bp Feature: domain Description: IS5 Location: 1904-2198 bp Feature: domain Description: IS5 Location: 1904 -2198 bp Feature: gene Location: 2533-2682 bp Feature: gene Location: 2978-4753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176-3833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176-3833 bp Feature: domain Description: GIIM Note: maturase Location: 3908-4046 bp Feature: domain Description: GIIM Note: maturase Location: 3908-4 04 6 bp Feature: gene Location: 4821-5141 bp Feature: gene Location: 5160-5522 bp Feature: domain Description: BHL Location: 5163-5427 bp Feature: domain Description: BHL Location: 5163-54 27 bp Feature: gene Location: 20841-21818 bp Feature: domain Description: DDE_Tnp_1_5 Location: 20934-21282 bp Feature: domain Description: DDE_Tnp_1_5 Location: 20934 -21282 bp Feature: gene Location: 21936-22172 bp Feature: domain Description: PRiA4_ORF3 Location: 21942-22110 bp Feature: domain Description: PRiA4 _ORF3 Location: 2194 2-22110 bp Feature: gene Location: 22324-23559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22522-23179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22522-23179 bp Feature: domain Description: GIIM Note: maturase Location: 23254-23482 bp Feature: domain Description: GIIM Note: maturase Location: 23254 -234 82 bp Feature: gene Location: 23855-24004 bp Feature: gene Location: 24233-25579 bp Feature: domain Description: Glyco_hydro_18 Location: 24377-25160 bp Feature: domain Description: Glyco_hydro_18 Location: 24 377-25160 bp Feature: gene Location: 34499-35461 bp Feature: domain Description: Transposase_31 Location: 34508-35114 bp Feature: domain Description: Transposase_31 Location: 34 508-35114 bp Feature: domain Description: YadD Location: 35279-35441 bp Feature: domain Description: YadD Location: 35279-354 4 1 bp Feature: gene Location: 35760-35909 bp Feature: gene Location: 36205-37440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36403-37060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364 03-37060 bp Feature: domain Description: GIIM Note: maturase Location: 37135-37363 bp Feature: domain Description: GIIM Note: maturase Location: 37135-37363 bp Feature: gene Location: 37592-38197 bp Feature: domain Description: PRiA4_ORF3 Location: 37610-38135 bp Feature: domain Description: PRiA4 _ORF3 Location: 37610-38135 bp Feature: gene Location: 38200-38760 bp Feature: domain Description: PinE Location: 38203-38752 bp Feature: domain Description: PinE Location: 38203-38752 bp Feature: gene Location: 38954-40123 bp Feature: domain Description: HTH_Tnp_1 Location: 38963-39179 bp Feature: domain Description: HTH_Tnp_1 Location: 38963-39179 bp Feature: domain Description: PHA02517 Location: 39410-40100 bp Feature: domain Description: PHA02517 Location: 394 10-4 0100 bp Feature: gene Location: 40247-43258 bp Feature: domain Description: DUF4158 Location: 40256-40772 bp Feature: domain Description: DUF4 158 Location: 4 0256-4 0772 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 42026-43190 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4 2026-4 3190 bp Feature: gene Location: 43340-44575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43538-44195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3538-4 4 195 bp Feature: domain Description: GIIM Note: maturase Location: 44270-44498 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 270-4 4 4 98 bp Feature: gene Location: 44871-44993 bp Feature: gene Location: 45176-46411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45374-46031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5374 -4 6031 bp Feature: domain Description: GIIM Note: maturase Location: 46106-46334 bp Feature: domain Description: GIIM Note: maturase Location: 4 6106-4 6334 bp Feature: gene Location: 46707-46856 bp Feature: gene Location: 47052-47348 bp Feature: domain Description: InsE Location: 47064-47343 bp Feature: domain Description: InsE Location: 4 7064 -4 734 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), BHL (smart00411), DDE_Tnp_1_5 (pfam13737), PRiA4_ORF3 (pfam07929), Glyco_hydro_18 (pfam00704), Transposase_31 (pfam04754), YadD (COG5464), PinE (COG1961)
HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), InsE (COG2963)