myRT

myRT report for GCA_001873705.1_ASM187370v1

Download annotations/find similar RTs

Seq: MNZR01000051.1 Syntrophobacteraceae bacterium CG2_30_61_12 cg2_3.0_scaffold_26753_c, whole genome shotgun sequence (3627 bp)
Overview 1 RT 1: 1-2938 bp Neighborhood of RT #1 [1, 2976] RVT-CRISPR GIIM Cas1_I-II-III Feature: gene Location: 1-214 bp Feature: gene Location: 214-2976 bp Ori: OIP99748.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 424-1039 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 424-1 039 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1 093-1 297 bp Feature: domain Description: Cas1_I-II-III Location: 1975-2938 bp Feature: domain Description: Cas1 _I-II-III Location: 1 975-2938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656)

Seq: MNZR01000203.1 Syntrophobacteraceae bacterium CG2_30_61_12 cg2_3.0_scaffold_11547_c, whole genome shotgun sequence (6818 bp)
Overview 1 RT 1: 208-6583 bp Neighborhood of RT #1 [208, 6750] PEP-CTERM RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 208-1503 bp Feature: gene Location: 2268-2918 bp Ori: OIP93392.1 Feature: domain Description: PEP-CTERM Location: 2841-2910 bp Feature: domain Description: PEP-CTERM Location: 2 841-2 910 bp Feature: gene Location: 3896-5200 bp Ori: OIP93393.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 -4796 bp Feature: domain Description: GIIM Note: maturase Location: 4892-5093 bp Feature: domain Description: GIIM Note: maturase Location: 4892 -5093 bp Feature: gene Location: 5353-6750 bp Ori: OIP93394.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6304 bp Feature: domain Description: GIIM Note: maturase Location: 6355-6583 bp Feature: domain Description: GIIM Note: maturase Location: 6355-6583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-GII, GIIM (pfam08388)

Seq: MNZR01000284.1 Syntrophobacteraceae bacterium CG2_30_61_12 cg2_3.0_scaffold_5246_c, whole genome shotgun sequence (11959 bp)
Overview 1 RT 1: 1776-9808 bp Neighborhood of RT #1 [1776, 9924] Commd8 Transposase_31 YadD RVT-GII GIIM HTH_Tnp_4 arc_metj RVT-GII Methyltransf_24 Feature: gene Location: 1776-2048 bp Ori: OIP90869.1 Feature: domain Description: Commd8 Location: 1791-1959 bp Feature: domain Description: Commd8 Location: 1791-1959 bp Feature: gene Location: 2142-3173 bp Ori: OIP90860.1 Feature: domain Description: Transposase_31 Location: 2160-2736 bp Feature: domain Description: Transposase_3 1 Location: 2160-273 6 bp Feature: domain Description: YadD Location: 2910-3096 bp Feature: domain Description: YadD Location: 2910-3 096 bp Feature: gene Location: 3897-4514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3900-4170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 900-4170 bp Feature: domain Description: GIIM Note: maturase Location: 4245-4449 bp Feature: domain Description: GIIM Note: maturase Location: 4245-4449 bp Feature: gene Location: 4618-4947 bp Ori: OIP90861.1 Feature: domain Description: HTH_Tnp_4 Location: 4717-4768 bp Feature: domain Description: HTH_Tnp_4 Location: 4717-4768 bp Feature: domain Description: arc_metj Location: 4819-4924 bp Feature: domain Description: arc_metj Location: 4819-4924 bp Feature: gene Location: 5097-5540 bp Feature: gene Location: 6240-6425 bp Feature: gene Location: 6459-6656 bp Feature: gene Location: 6687-7484 bp Ori: OIP90865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7029-7434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7029-743 4 bp Feature: gene Location: 8178-8912 bp Feature: gene Location: 8998-9924 bp Ori: OIP90867.1 Feature: domain Description: Methyltransf_24 Location: 9487-9808 bp Feature: domain Description: Methyltransf_24 Location: 9487-9808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Commd8 (cd04756), Transposase_31 (pfam04754), YadD (COG5464), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), arc_metj (LOAD_arc_metj), Methyltransf_24 (pfam13578)