myRT

myRT report for GCA_001874865.1_ASM187486v1

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Seq: MPCK01000001.1 Klebsiella pneumoniae strain AR_0010 scaffold00001, whole genome shotgun sequence (4200019 bp)
Overview 1 RT 1: 587812-593007 bp 2 RT 2: 1430124-1435541 bp 3 RT 3: 2843248-2849730 bp 4 RT 4: 3281233-3284680 bp 5 RT 5: 4036348-4041744 bp 6 RT 6: 4182253-4188440 bp Neighborhood of RT #1 [587812, 593195] SGNH_hydrolase_like_2 RVT-GII PRK10276 Neighborhood of RT #2 [1430124, 1435543] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2843248, 2849732] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [3281233, 3284680] Terminase_2 RVT-GII Neighborhood of RT #5 [4036348, 4041881] PRK10276 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #6 [4182253, 4188440] Rep_3 RVT-GII INT_Cre_C Feature: gene Location: 587812-589584 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 589123-589561 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 5891 23-589561 bp Feature: gene Location: 589587-590345 bp Feature: gene Location: 591071-592558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591476-592166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 476-5921 66 bp Feature: gene Location: 592639-592878 bp Feature: gene Location: 592878-593195 bp Feature: domain Description: PRK10276 Location: 592884-593007 bp Feature: domain Description: PRK1 0276 Location: 592884-593007 bp Feature: gene Location: 1430124-1431263 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1430307-1431207 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 430307-1 431 207 bp Feature: gene Location: 1431434-1431676 bp Feature: domain Description: DinI Location: 1431485-1431665 bp Feature: domain Description: DinI Location: 1 431 485-1 431 665 bp Feature: gene Location: 1432290-1433777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432695-1433382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 432695-1 433382 bp Feature: gene Location: 1433856-1434275 bp Feature: domain Description: PRK10276 Location: 1433859-1434270 bp Feature: domain Description: PRK1 0276 Location: 1 433859-1 434270 bp Feature: gene Location: 1434278-1435543 bp Feature: domain Description: umuC Location: 1434281-1435541 bp Feature: domain Description: umuC Location: 1 434281 -1 435541 bp Feature: gene Location: 2843248-2844306 bp Feature: domain Description: YccC Location: 2843254-2844292 bp Feature: domain Description: YccC Location: 2843254-2844292 bp Feature: gene Location: 2844405-2844878 bp Feature: domain Description: PRK10016 Location: 2844408-2844867 bp Feature: domain Description: PRK1 001 6 Location: 2844408-2844867 bp Feature: gene Location: 2844960-2846447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845365-2846052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845365-2846052 bp Feature: gene Location: 2846964-2848127 bp Feature: domain Description: dacD Location: 2846967-2848122 bp Feature: domain Description: dacD Location: 2846967-28481 22 bp Feature: gene Location: 2848308-2849732 bp Feature: domain Description: SbcB Location: 2848314-2849730 bp Feature: domain Description: SbcB Location: 284831 4-2849730 bp Feature: gene Location: 3281233-3281853 bp Feature: domain Description: Terminase_2 Location: 3281278-3281776 bp Feature: domain Description: Terminase_2 Location: 3281 278-3281 776 bp Feature: gene Location: 3281931-3282188 bp Feature: gene Location: 3282588-3284075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3282993-3283683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3282993-3283683 bp Feature: gene Location: 3284172-3284510 bp Feature: gene Location: 3284510-3284680 bp Feature: gene Location: 4036348-4036773 bp Feature: domain Description: PRK10276 Location: 4036351-4036759 bp Feature: domain Description: PRK1 0276 Location: 4036351 -4036759 bp Feature: gene Location: 4036836-4038056 bp Feature: domain Description: zf-ISL3 Location: 4036968-4037094 bp Feature: domain Description: zf-ISL3 Location: 4036968-4037094 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 4037112-4037259 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 40371 1 2-4037259 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 4037310-4038015 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 403731 0-403801 5 bp Feature: gene Location: 4038500-4039987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4038905-4039595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4038905-4039595 bp Feature: gene Location: 4040236-4041207 bp Feature: domain Description: StbA Location: 4040239-4041184 bp Feature: domain Description: StbA Location: 4040239-4041 1 84 bp Feature: gene Location: 4041210-4041881 bp Feature: domain Description: Plasmid_stab_B Location: 4041225-4041432 bp Feature: domain Description: Plasmid_stab_B Location: 4041 225-4041 432 bp Feature: domain Description: Plasmid_stab_B Location: 4041537-4041744 bp Feature: domain Description: Plasmid_stab_B Location: 4041 537-4041 744 bp Feature: gene Location: 4182253-4182690 bp Feature: domain Description: Rep_3 Location: 4182259-4182652 bp Feature: domain Description: Rep_3 Location: 41 82259-41 82652 bp Feature: gene Location: 4183473-4184534 bp Feature: gene Location: 4185390-4186835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185795-4186443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 85795-41 86443 bp Feature: gene Location: 4186921-4188057 bp Feature: domain Description: INT_Cre_C Location: 4187344-4187998 bp Feature: domain Description: INT_Cre_C Location: 41 87344-41 87998 bp Feature: gene Location: 4188123-4188440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SGNH_hydrolase_like_2 (cd01834), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)
Terminase_2 (pfam03592), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), StbA (pfam06406), Plasmid_stab_B (pfam10784), Rep_3 (pfam01051), INT_Cre_C (cd00799)