myRT

myRT report for GCA_001874875.1_ASM187487v1

Download annotations/find similar RTs

Seq: MPCG01000002.1 Klebsiella pneumoniae strain AR_0039 scaffold00002, whole genome shotgun sequence (708335 bp)
Overview 1 RT 1: 400206-405586 bp Neighborhood of RT #1 [400206, 405627] FimC DDE_Tnp_1_5 RVT-GII GIIM InsE lpfA Feature: gene Location: 400206-400820 bp Ori: OKN31504.1 Feature: domain Description: FimC Location: 400293-400806 bp Feature: domain Description: FimC Location: 400293-400806 bp Feature: gene Location: 400845-401768 bp Ori: OKN31505.1 Feature: domain Description: DDE_Tnp_1_5 Location: 400902-401235 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 400902-401 235 bp Feature: gene Location: 402376-403899 bp Ori: OKN31506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402649-403381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402649-403381 bp Feature: domain Description: GIIM Note: maturase Location: 403456-403654 bp Feature: domain Description: GIIM Note: maturase Location: 403456-403654 bp Feature: gene Location: 404958-405236 bp Ori: OKN31507.1 Feature: domain Description: InsE Location: 404970-405228 bp Feature: domain Description: InsE Location: 404970-405228 bp Feature: gene Location: 405259-405627 bp Ori: OKN31508.1 Feature: domain Description: lpfA Location: 405274-405586 bp Feature: domain Description: lpfA Location: 405274-405586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), DDE_Tnp_1_5 (pfam13737), RVT-GII, GIIM (pfam08388), InsE (COG2963), lpfA (PRK15289)

Seq: MPCG01000001.1 Klebsiella pneumoniae strain AR_0039 scaffold00001, whole genome shotgun sequence (4501036 bp)
Overview 1 RT 1: 1327068-1335979 bp 2 RT 2: 2142322-2148809 bp Neighborhood of RT #1 [1327068, 1335987] PAPS_reductase Phage_GPA RVT-Retrons Q Neighborhood of RT #2 [2142322, 2148809] PRK08643 InsE RVT-GII GIIM Acetyltransf_10 Feature: gene Location: 1327068-1328084 bp Ori: OKN38532.1 Feature: domain Description: PAPS_reductase Location: 1327122-1327767 bp Feature: domain Description: PAPS_reductase Location: 132 712 2 -132 7767 bp Feature: gene Location: 1328237-1330303 bp Ori: OKN38533.1 Feature: domain Description: Phage_GPA Location: 1328615-1329578 bp Feature: domain Description: Phage_GPA Location: 132 8615-132 9578 bp Feature: gene Location: 1330751-1332523 bp Ori: OKN38534.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1330928-1331549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133092 8-1331549 bp Feature: gene Location: 1333502-1334326 bp Feature: gene Location: 1334926-1335987 bp Ori: OKN38536.1 Feature: domain Description: Q Location: 1335013-1335979 bp Feature: domain Description: Q Location: 1335013-1335979 bp Feature: gene Location: 2142322-2143092 bp Ori: OKN39335.1 Feature: domain Description: PRK08643 Location: 2142325-2143090 bp Feature: domain Description: PRK08643 Location: 2 142 32 5-2 143090 bp Feature: gene Location: 2144109-2144387 bp Ori: OKN39336.1 Feature: domain Description: InsE Location: 2144121-2144379 bp Feature: domain Description: InsE Location: 2 14412 1-2 144379 bp Feature: gene Location: 2145446-2146969 bp Ori: OKN39337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145719-2146451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 145719-2 146451 bp Feature: domain Description: GIIM Note: maturase Location: 2146526-2146724 bp Feature: domain Description: GIIM Note: maturase Location: 2 14652 6-2 14672 4 bp Feature: gene Location: 2147528-2147983 bp Ori: OKN39338.1 Feature: domain Description: Acetyltransf_10 Location: 2147618-2147933 bp Feature: domain Description: Acetyltransf_10 Location: 2 147618-2 147933 bp Feature: gene Location: 2148237-2148809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAPS_reductase (TIGR02057), Phage_GPA (pfam05840), RVT-Retrons, Q (PHA02536), PRK08643 ((S)-acetoin forming diacetyl reductase), InsE (COG2963), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673)

Seq: MPCG01000003.1 Klebsiella pneumoniae strain AR_0039 scaffold00003, whole genome shotgun sequence (319732 bp)
Overview 1 RT 1: 123034-128050 bp 2 RT 2: 275128-280149 bp Neighborhood of RT #1 [123034, 128052] umuC PRK10276 RVT-GII Antirestrict Neighborhood of RT #2 [275128, 280262] InsE PHA02517 RVT-GII GIIM COG3547 Phage_integrase Feature: gene Location: 123034-124305 bp Ori: OKN29906.1 Feature: domain Description: umuC Location: 123037-124300 bp Feature: domain Description: umuC Location: 123 03 7-1243 00 bp Feature: gene Location: 124305-124730 bp Ori: OKN29907.1 Feature: domain Description: PRK10276 Location: 124308-124716 bp Feature: domain Description: PRK10276 Location: 1243 08-124716 bp Feature: gene Location: 125210-126643 bp Ori: OKN29908.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125537-126251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12553 7-126251 bp Feature: gene Location: 126877-127107 bp Feature: gene Location: 127627-128052 bp Ori: OKN29910.1 Feature: domain Description: Antirestrict Location: 127762-128050 bp Feature: domain Description: Antirestrict Location: 127762-128050 bp Feature: gene Location: 275128-275430 bp Ori: OKN30061.1 Feature: domain Description: InsE Location: 275137-275419 bp Feature: domain Description: InsE Location: 27513 7-275419 bp Feature: gene Location: 275643-275882 bp Ori: OKN30062.1 Feature: domain Description: PHA02517 Location: 275646-275817 bp Feature: domain Description: PHA02517 Location: 275646-275817 bp Feature: gene Location: 276474-277997 bp Ori: OKN30063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276747-277479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276747-277479 bp Feature: domain Description: GIIM Note: maturase Location: 277554-277752 bp Feature: domain Description: GIIM Note: maturase Location: 277554-277752 bp Feature: gene Location: 278539-279615 bp Ori: OKN30064.1 Feature: domain Description: COG3547 Location: 278578-279499 bp Feature: domain Description: COG3 547 Location: 278578-279499 bp Feature: gene Location: 279915-280262 bp Ori: OKN30065.1 Feature: domain Description: Phage_integrase Location: 279921-280149 bp Feature: domain Description: Phage_integrase Location: 279921-280149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), COG3547 (Transposase ), Phage_integrase (pfam00589)