myRT

myRT report for GCA_001875075.1_ASM187507v1

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Seq: MPCH01000004.1 Klebsiella pneumoniae strain AR_0034 scaffold00004, whole genome shotgun sequence (74591 bp)
Overview 1 RT 1: 59444-64513 bp Neighborhood of RT #1 [59444, 64515] PRK10276 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII Antirestrict Feature: gene Location: 59444-59869 bp Ori: OKN29698.1 Feature: domain Description: PRK10276 Location: 59447-59855 bp Feature: domain Description: PRK1 0276 Location: 59447-59855 bp Feature: gene Location: 59931-61151 bp Ori: OKN29699.1 Feature: domain Description: zf-ISL3 Location: 60063-60189 bp Feature: domain Description: zf-ISL3 Location: 60063-601 89 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 60207-60354 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 60207-60354 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 60405-61110 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 60405-61 1 1 0 bp Feature: gene Location: 61673-63106 bp Ori: OKN29700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62000-62714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62000-6271 4 bp Feature: gene Location: 63340-63570 bp Feature: gene Location: 64090-64515 bp Ori: OKN29702.1 Feature: domain Description: Antirestrict Location: 64225-64513 bp Feature: domain Description: Antirestrict Location: 64225-6451 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, Antirestrict (pfam03230)

Seq: MPCH01000002.1 Klebsiella pneumoniae strain AR_0034 scaffold00002, whole genome shotgun sequence (2036197 bp)
Overview 1 RT 1: 33996-38484 bp 2 RT 2: 1131319-1136290 bp Neighborhood of RT #1 [33996, 38648] PRK09692 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #2 [1131319, 1136295] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu PRK00872 Feature: gene Location: 33996-34418 bp Ori: OKN31826.1 Feature: domain Description: PRK09692 Location: 33999-34380 bp Feature: domain Description: PRK09692 Location: 33999-34380 bp Feature: gene Location: 34420-35061 bp Feature: gene Location: 35487-36452 bp Ori: OKN31828.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35595-36192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35595-36192 bp Feature: gene Location: 36430-38022 bp Ori: OKN31829.1 Feature: domain Description: COG3950 Location: 36610-37831 bp Feature: domain Description: COG3950 Location: 36610-37831 bp Feature: gene Location: 38019-38648 bp Ori: OKN31830.1 Feature: domain Description: TIGR02646 Location: 38109-38484 bp Feature: domain Description: TIGR02 646 Location: 38109-38484 bp Feature: gene Location: 1131319-1132113 bp Ori: OKN32877.1 Feature: domain Description: PRK09692 Location: 1131328-1131691 bp Feature: domain Description: PRK09692 Location: 113132 8-1131691 bp Feature: domain Description: PRK09692 Location: 1131709-1132084 bp Feature: domain Description: PRK09692 Location: 1131709-1132 084 bp Feature: gene Location: 1132345-1132986 bp Ori: OKN32878.1 Feature: domain Description: SLATT_5 Location: 1132348-1132951 bp Feature: domain Description: SLATT_5 Location: 1132 348-1132 951 bp Feature: gene Location: 1133181-1134590 bp Ori: OKN32879.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1133418-1134030 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1133418-1134030 bp Feature: gene Location: 1135287-1135466 bp Ori: OKN32880.1 Feature: domain Description: Psu Location: 1135305-1135464 bp Feature: domain Description: Psu Location: 1135305-1135464 bp Feature: gene Location: 1135828-1136295 bp Ori: OKN32881.1 Feature: domain Description: PRK00872 Location: 1135834-1136290 bp Feature: domain Description: PRK00872 Location: 1135834-11362 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK00872 (hypothetical protein; Provisional)