myRT

myRT report for GCA_001875135.1_ASM187513v1

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Seq: MPCB01000002.1 Klebsiella pneumoniae strain AR_0044 scaffold00002, whole genome shotgun sequence (2908400 bp)
Overview 1 RT 1: 1050141-1056624 bp 2 RT 2: 1238777-1243701 bp 3 RT 3: 1331478-1336689 bp 4 RT 4: 1592069-1598467 bp Neighborhood of RT #1 [1050141, 1056626] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #2 [1238777, 1243701] umuC PRK10276 RVT-GII HTH_Hin_like Neighborhood of RT #3 [1331478, 1336721] MFS_ExuT_GudP_like PRK15440 RVT-GII PRK15440 IclR Neighborhood of RT #4 [1592069, 1598467] PRK05433 RVT-GII Dcm Dcm Feature: gene Location: 1050141-1051199 bp Feature: domain Description: YccC Location: 1050147-1051185 bp Feature: domain Description: YccC Location: 1 0501 47-1 051 1 85 bp Feature: gene Location: 1051298-1051771 bp Feature: domain Description: PRK10016 Location: 1051301-1051760 bp Feature: domain Description: PRK1 001 6 Location: 1 051 301 -1 051 760 bp Feature: gene Location: 1051853-1053337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052255-1052945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 052255-1 052945 bp Feature: gene Location: 1053858-1055021 bp Feature: domain Description: dacD Location: 1053861-1055016 bp Feature: domain Description: dacD Location: 1 053861 -1 05501 6 bp Feature: gene Location: 1055202-1056626 bp Feature: domain Description: SbcB Location: 1055208-1056624 bp Feature: domain Description: SbcB Location: 1 055208-1 056624 bp Feature: gene Location: 1238777-1240042 bp Feature: domain Description: umuC Location: 1238780-1240040 bp Feature: domain Description: umuC Location: 1 238780-1 240040 bp Feature: gene Location: 1240044-1240550 bp Feature: domain Description: PRK10276 Location: 1240134-1240545 bp Feature: domain Description: PRK1 0276 Location: 1 2401 34-1 240545 bp Feature: gene Location: 1240543-1242027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240945-1241635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 240945-1 241 635 bp Feature: gene Location: 1242637-1242759 bp Feature: domain Description: HTH_Hin_like Location: 1242640-1242748 bp Feature: domain Description: HTH_Hin_like Location: 1 242640-1 242748 bp Feature: gene Location: 1243171-1243701 bp Feature: gene Location: 1331478-1332770 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1331523-1332720 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 331 523-1 332720 bp Feature: gene Location: 1332810-1333832 bp Feature: domain Description: PRK15440 Location: 1332813-1333830 bp Feature: domain Description: PRK1 5440 Location: 1 33281 3-1 333830 bp Feature: gene Location: 1333923-1335407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1334325-1335015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 334325-1 33501 5 bp Feature: gene Location: 1335740-1335925 bp Feature: domain Description: PRK15440 Location: 1335743-1335890 bp Feature: domain Description: PRK1 5440 Location: 1 335743-1 335890 bp Feature: gene Location: 1335936-1336721 bp Feature: domain Description: IclR Location: 1335963-1336689 bp Feature: domain Description: IclR Location: 1 335963-1 336689 bp Feature: gene Location: 1592069-1593868 bp Feature: domain Description: PRK05433 Location: 1592072-1593857 bp Feature: domain Description: PRK05433 Location: 1 592072-1 593857 bp Feature: gene Location: 1594381-1594620 bp Feature: gene Location: 1594698-1596182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595100-1595790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5951 00-1 595790 bp Feature: gene Location: 1596678-1598234 bp Feature: domain Description: Dcm Location: 1596831-1597269 bp Feature: domain Description: Dcm Location: 1 596831 -1 597269 bp Feature: domain Description: Dcm Location: 1598034-1598193 bp Feature: domain Description: Dcm Location: 1 598034-1 5981 93 bp Feature: gene Location: 1598231-1598467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), HTH_Hin_like (cd00569), MFS_ExuT_GudP_like (cd17319), PRK15440 (L-rhamnonate dehydratase; Provisional)
IclR (pfam01614), PRK05433 (GTP-binding protein LepA; Provisional), Dcm (COG0270)

Seq: MPCB01000001.1 Klebsiella pneumoniae strain AR_0044 scaffold00001, whole genome shotgun sequence (1635849 bp)
Overview 1 RT 1: 858163-864461 bp 2 RT 2: 1255444-1261667 bp 3 RT 3: 1601096-1606604 bp Neighborhood of RT #1 [858163, 864461] bioD LivF RVT-GII UvrB Neighborhood of RT #2 [1255444, 1261669] TIR_2 McrA McrA RVT-GII PRK10276 umuC Neighborhood of RT #3 [1601096, 1606612] Dcm Dcm RVT-GII PRK10597 DUF1367 Feature: gene Location: 858163-858885 bp Feature: domain Description: bioD Location: 858178-858838 bp Feature: domain Description: bioD Location: 858178-858838 bp Feature: gene Location: 858827-859549 bp Feature: domain Description: LivF Location: 858830-859508 bp Feature: domain Description: LivF Location: 858830-859508 bp Feature: gene Location: 860224-861708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860626-861316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86062 6-861316 bp Feature: gene Location: 862170-864191 bp Feature: domain Description: UvrB Location: 862176-864177 bp Feature: domain Description: UvrB Location: 862 176-864177 bp Feature: gene Location: 864369-864461 bp Feature: gene Location: 1255444-1255935 bp Feature: domain Description: TIR_2 Location: 1255453-1255684 bp Feature: domain Description: TIR_2 Location: 12 55453-12 55684 bp Feature: gene Location: 1256219-1257196 bp Feature: domain Description: McrA Location: 1256483-1257023 bp Feature: domain Description: McrA Location: 12 56483-12 5702 3 bp Feature: domain Description: McrA Location: 1257026-1257125 bp Feature: domain Description: McrA Location: 12 5702 6-12 5712 5 bp Feature: gene Location: 1258419-1259903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258821-1259511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 5882 1-12 59511 bp Feature: gene Location: 1259982-1260401 bp Feature: domain Description: PRK10276 Location: 1259985-1260396 bp Feature: domain Description: PRK102 76 Location: 12 59985-12 60396 bp Feature: gene Location: 1260404-1261669 bp Feature: domain Description: umuC Location: 1260407-1261667 bp Feature: domain Description: umuC Location: 12 60407-12 61667 bp Feature: gene Location: 1601096-1601353 bp Feature: gene Location: 1601350-1603335 bp Feature: domain Description: Dcm Location: 1601371-1602358 bp Feature: domain Description: Dcm Location: 1601371-1602 358 bp Feature: domain Description: Dcm Location: 1603111-1603294 bp Feature: domain Description: Dcm Location: 1603111-16032 94 bp Feature: gene Location: 1603831-1605315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604233-1604923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16042 33-160492 3 bp Feature: gene Location: 1605394-1605627 bp Feature: domain Description: PRK10597 Location: 1605397-1605622 bp Feature: domain Description: PRK10597 Location: 1605397-160562 2 bp Feature: gene Location: 1606016-1606612 bp Feature: domain Description: DUF1367 Location: 1606019-1606604 bp Feature: domain Description: DUF1367 Location: 1606019-1606604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bioD (TIGR00347), LivF (COG0410), RVT-GII, UvrB (pfam12344), TIR_2 (pfam13676), McrA (COG4058), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Dcm (COG0270), PRK10597 (DNA damage-inducible protein I; Provisional)
DUF1367 (pfam07105)

Seq: MPCB01000004.1 Klebsiella pneumoniae strain AR_0044 scaffold00004, whole genome shotgun sequence (168290 bp)
Overview 1 RT 1: 19111-24085 bp Neighborhood of RT #1 [19111, 24090] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 19111-19536 bp Feature: domain Description: Antirestrict Location: 19246-19534 bp Feature: domain Description: Antirestrict Location: 19246-1953 4 bp Feature: gene Location: 20040-20270 bp Feature: gene Location: 20504-21988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20906-21596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20906-21596 bp Feature: gene Location: 22394-22819 bp Feature: domain Description: PRK10276 Location: 22397-22805 bp Feature: domain Description: PRK10276 Location: 223 97-22805 bp Feature: gene Location: 22819-24090 bp Feature: domain Description: umuC Location: 22822-24085 bp Feature: domain Description: umuC Location: 22822-24085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)