myRT

myRT report for GCA_001875215.1_ASM187521v1

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Seq: MPBN01000001.1 Pseudomonas aeruginosa strain AR_0108 scaffold00001, whole genome shotgun sequence (6879367 bp)
Overview 1 RT 1: 5157114-5167785 bp Neighborhood of RT #1 [5157114, 5167850] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 5157114-5158967 bp Feature: domain Description: PRK05658 Location: 5157126-5158965 bp Feature: domain Description: PRK05658 Location: 51 571 26-51 58965 bp Feature: gene Location: 5159074-5162811 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5159182-5159839 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 51 591 82-51 59839 bp Feature: domain Description: PRK09776 Location: 5160052-5160523 bp Feature: domain Description: PRK09776 Location: 51 60052-51 60523 bp Feature: domain Description: PAS Location: 5160595-5161105 bp Feature: domain Description: PAS Location: 51 60595-51 61 1 05 bp Feature: domain Description: PRK10060 Location: 5161114-5162761 bp Feature: domain Description: PRK1 0060 Location: 51 61 1 1 4-51 62761 bp Feature: gene Location: 5163892-5165577 bp Feature: RT Description: RVT_N Location: 5163949-5164189 bp Feature: RT Description: RVT_N Location: 51 63949-51 641 89 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5164237-5164873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 64237-51 64873 bp Feature: domain Description: GIIM Note: maturase Location: 5164927-5165158 bp Feature: domain Description: GIIM Note: maturase Location: 51 64927-51 651 58 bp Feature: domain Description: HNH Note: nucleases Location: 5165410-5165548 bp Feature: domain Description: HNH Note: nucleases Location: 51 6541 0-51 65548 bp Feature: gene Location: 5166301-5167422 bp Feature: domain Description: COG3177 Location: 5166319-5167411 bp Feature: domain Description: COG31 77 Location: 51 6631 9-51 6741 1 bp Feature: gene Location: 5167515-5167850 bp Feature: domain Description: NERD Location: 5167614-5167785 bp Feature: domain Description: NERD Location: 51 6761 4-51 67785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)