myRT

myRT report for GCA_001878885.1_ASM187888v1

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Seq: MEKB01000117.1 Salmonella enterica subsp. enterica serovar Pomona strain CFSAN039526 contig-250_41, whole genome shotgun sequence (28289 bp)
Overview 1 RT 1: 20159-27616 bp Neighborhood of RT #1 [20159, 27616] COG3547 RVT-UG4 IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Feature: gene Location: 20159-21163 bp Ori: OIV02341.1 Feature: domain Description: COG3547 Location: 20177-21134 bp Feature: domain Description: COG3547 Location: 201 77-21 1 34 bp Feature: gene Location: 21230-21436 bp Feature: gene Location: 21437-21664 bp Ori: OIV02343.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 21443-21611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 21 443-21 61 1 bp Feature: gene Location: 21807-27263 bp Ori: OIV02344.1 Feature: domain Description: IAT_beta Location: 22194-23055 bp Feature: domain Description: IAT_beta Location: 221 94-23055 bp Feature: domain Description: Invasin_D3 Location: 23385-23745 bp Feature: domain Description: Invasin_D3 Location: 23385-23745 bp Feature: domain Description: Invasin_D3 Location: 23766-24087 bp Feature: domain Description: Invasin_D3 Location: 23766-24087 bp Feature: domain Description: Invasin_D3 Location: 24114-24390 bp Feature: domain Description: Invasin_D3 Location: 241 1 4-24390 bp Feature: domain Description: Invasin_D3 Location: 24477-24741 bp Feature: domain Description: Invasin_D3 Location: 24477-24741 bp Feature: domain Description: Invasin_D3 Location: 24774-25071 bp Feature: domain Description: Invasin_D3 Location: 24774-25071 bp Feature: domain Description: Invasin_D3 Location: 25176-25422 bp Feature: domain Description: Invasin_D3 Location: 251 76-25422 bp Feature: domain Description: Invasin_D3 Location: 25470-25758 bp Feature: domain Description: Invasin_D3 Location: 25470-25758 bp Feature: domain Description: Invasin_D3 Location: 25818-26049 bp Feature: domain Description: Invasin_D3 Location: 2581 8-26049 bp Feature: domain Description: Invasin_D3 Location: 26175-26376 bp Feature: domain Description: Invasin_D3 Location: 261 75-26376 bp Feature: gene Location: 27356-27616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG4, IAT_beta (pfam11924), Invasin_D3 (pfam09134)

Seq: MEKB01000145.1 Salmonella enterica subsp. enterica serovar Pomona strain CFSAN039526 contig-250_67, whole genome shotgun sequence (4811 bp)
Overview 1 RT 1: 1841-4097 bp Neighborhood of RT #1 [1841, 4409] RVT_N RVT-GII Feature: gene Location: 1841-2029 bp Feature: gene Location: 2113-2824 bp Feature: gene Location: 3542-4409 bp Feature: domain Description: RVT_N Location: 3605-3848 bp Feature: domain Description: RVT_N Location: 3605-3848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3893-4097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3893-4097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: MEKB01000129.1 Salmonella enterica subsp. enterica serovar Pomona strain CFSAN039526 contig-250_52, whole genome shotgun sequence (12967 bp)
Overview 1 RT 1: 5803-11590 bp Neighborhood of RT #1 [5803, 11616] DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 Feature: gene Location: 5803-6198 bp Feature: gene Location: 6475-6774 bp Ori: OIV00616.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 6481-6712 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6481-6712 bp Feature: gene Location: 7324-8658 bp Ori: OIV00617.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7609-8296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7609-8296 bp Feature: gene Location: 9232-10812 bp Ori: OIV00618.1 Feature: domain Description: Glyco_hydro_79n Location: 9517-10342 bp Feature: domain Description: Glyco_hydro_79n Location: 9517-103 42 bp Feature: gene Location: 10993-11616 bp Ori: OIV00619.1 Feature: domain Description: SR_Res_par Location: 11008-11434 bp Feature: domain Description: SR_Res_par Location: 11008-1143 4 bp Feature: domain Description: HTH_7 Location: 11470-11590 bp Feature: domain Description: HTH_7 Location: 11470-11590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Glyco_hydro_79n (pfam03662), SR_Res_par (cd03767), HTH_7 (pfam02796)

Seq: MEKB01000167.1 Salmonella enterica subsp. enterica serovar Pomona strain CFSAN039526 contig-250_87, whole genome shotgun sequence (2191 bp)
Overview 1 RT 1: 133-1384 bp Neighborhood of RT #1 [133, 1614] RVT_N RVT-GII GIIM Feature: gene Location: 133-1614 bp Ori: OIU98034.1 Feature: domain Description: RVT_N Location: 184-427 bp Feature: domain Description: RVT_N Location: 184 -4 27 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 72-1099 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MEKB01000140.1 Salmonella enterica subsp. enterica serovar Pomona strain CFSAN039526 contig-250_62, whole genome shotgun sequence (5874 bp)
Overview 1 RT 1: 854-2325 bp Neighborhood of RT #1 [854, 2372] RVT_N RVT-GII COG4683 HTH_XRE Feature: gene Location: 854-1432 bp Ori: OIU99643.1 Feature: domain Description: RVT_N Location: 908-1151 bp Feature: domain Description: RVT_N Location: 908-115 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196-1376 bp Feature: gene Location: 1721-2071 bp Ori: OIU99644.1 Feature: domain Description: COG4683 Location: 1724-2066 bp Feature: domain Description: COG4683 Location: 1724-2066 bp Feature: gene Location: 2073-2372 bp Ori: OIU99645.1 Feature: domain Description: HTH_XRE Location: 2166-2325 bp Feature: domain Description: HTH_XRE Location: 2166-2325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4683 (Uncharacterized protein ), HTH_XRE (smart00530)