myRT

myRT report for GCA_001878895.1_ASM187889v1

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Seq: MEKA01000038.1 Salmonella enterica subsp. enterica serovar Give strain CFSAN039524 scaffold_30, whole genome shotgun sequence (13582 bp)
Overview 1 RT 1: 9673-13264 bp Neighborhood of RT #1 [9673, 13494] COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 9673-9861 bp Feature: gene Location: 10110-11105 bp Feature: domain Description: COG3547 Location: 10128-11091 bp Feature: domain Description: COG3547 Location: 1 01 28-1 1 091 bp Feature: gene Location: 12013-13494 bp Feature: RT Description: RVT_N Location: 12064-12307 bp Feature: RT Description: RVT_N Location: 1 2064-1 2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12352-12979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2352-1 2979 bp Feature: domain Description: GIIM Note: maturase Location: 13039-13264 bp Feature: domain Description: GIIM Note: maturase Location: 1 3039-1 3264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MEKA01000035.1 Salmonella enterica subsp. enterica serovar Give strain CFSAN039524 scaffold_28, whole genome shotgun sequence (18679 bp)
Overview 1 RT 1: 6395-11812 bp Neighborhood of RT #1 [6395, 11812] HTH_28 rve PBP2_GluR0 RVT_N RVT-GII Feature: gene Location: 6395-7255 bp Feature: domain Description: HTH_28 Location: 6443-6590 bp Feature: domain Description: HTH_2 8 Location: 6443-6590 bp Feature: domain Description: rve Location: 6824-7190 bp Feature: domain Description: rve Location: 682 4-7190 bp Feature: gene Location: 7695-8750 bp Feature: domain Description: PBP2_GluR0 Location: 7770-8748 bp Feature: domain Description: PBP2 _GluR0 Location: 7770-8748 bp Feature: gene Location: 9127-9994 bp Feature: RT Description: RVT_N Location: 9190-9433 bp Feature: RT Description: RVT_N Location: 9190-9433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9478-9673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9478-9673 bp Feature: gene Location: 10712-11423 bp Feature: gene Location: 11507-11812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), rve (pfam00665), PBP2_GluR0 (cd00997), RVT_N (pfam13655), RVT-GII

Seq: MEKA01000040.1 Salmonella enterica subsp. enterica serovar Give strain CFSAN039524 scaffold_32, whole genome shotgun sequence (10561 bp)
Overview 1 RT 1: 1291-6867 bp Neighborhood of RT #1 [1291, 7022] SR_Res_par HTH_7 Glyco_hydro_79n RVT-GII ParE PRK11235 Feature: gene Location: 1291-1914 bp Feature: domain Description: SR_Res_par Location: 1306-1732 bp Feature: domain Description: SR_Res_par Location: 13 06-173 2 bp Feature: domain Description: HTH_7 Location: 1768-1888 bp Feature: domain Description: HTH_7 Location: 1768-1888 bp Feature: gene Location: 2095-3675 bp Feature: domain Description: Glyco_hydro_79n Location: 2380-3205 bp Feature: domain Description: Glyco_hydro_79n Location: 23 80-3 205 bp Feature: gene Location: 4249-5583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4534-5221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 4-5221 bp Feature: gene Location: 6433-6738 bp Feature: domain Description: ParE Location: 6448-6724 bp Feature: domain Description: ParE Location: 6448-6724 bp Feature: gene Location: 6735-7022 bp Feature: domain Description: PRK11235 Location: 6744-6867 bp Feature: domain Description: PRK1123 5 Location: 6744-6867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), HTH_7 (pfam02796), Glyco_hydro_79n (pfam03662), RVT-GII, ParE (COG3668), PRK11235 (type II toxin-antitoxin system RelB/DinJ family antitoxin)