myRT

myRT report for GCA_001879775.1_ASM187977v1

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Seq: MEJA01000112.1 Salmonella enterica strain CFSAN039514 scaffold_58, whole genome shotgun sequence (14367 bp)
Overview 1 RT 1: 10447-14038 bp Neighborhood of RT #1 [10447, 14268] COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 10447-10635 bp Feature: gene Location: 10884-11879 bp Feature: domain Description: COG3547 Location: 10902-11865 bp Feature: domain Description: COG3547 Location: 1 0902-1 1 865 bp Feature: gene Location: 12787-14268 bp Ori: OIX07855.1 Feature: domain Description: RVT_N Location: 12838-13081 bp Feature: domain Description: RVT_N Location: 1 2838-1 3081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13126-13753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 26-1 3753 bp Feature: domain Description: GIIM Note: maturase Location: 13813-14038 bp Feature: domain Description: GIIM Note: maturase Location: 1 381 3-1 4038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MEJA01000115.1 Salmonella enterica strain CFSAN039514 scaffold_60, whole genome shotgun sequence (13138 bp)
Overview 1 RT 1: 5890-11677 bp Neighborhood of RT #1 [5890, 11703] DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 Feature: gene Location: 5890-6285 bp Feature: gene Location: 6562-6861 bp Ori: OIX07452.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 6568-6799 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6568-6799 bp Feature: gene Location: 7411-8745 bp Ori: OIX07453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7696-8383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7696-8383 bp Feature: gene Location: 9319-10899 bp Ori: OIX07454.1 Feature: domain Description: Glyco_hydro_79n Location: 9604-10429 bp Feature: domain Description: Glyco_hydro_79n Location: 9604-1042 9 bp Feature: gene Location: 11080-11703 bp Ori: OIX07455.1 Feature: domain Description: SR_Res_par Location: 11095-11521 bp Feature: domain Description: SR_Res_par Location: 11095-1152 1 bp Feature: domain Description: HTH_7 Location: 11557-11677 bp Feature: domain Description: HTH_7 Location: 11557-11677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Glyco_hydro_79n (pfam03662), SR_Res_par (cd03767), HTH_7 (pfam02796)

Seq: MEJA01000001.1 Salmonella enterica strain CFSAN039514 scaffold_0, whole genome shotgun sequence (474000 bp)
Overview 1 RT 1: 45032-51350 bp Neighborhood of RT #1 [45032, 51412] PRK10216 PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 45032-45991 bp Ori: OIX16339.1 Feature: domain Description: PRK10216 Location: 45035-45986 bp Feature: domain Description: PRK10216 Location: 4503 5-45986 bp Feature: gene Location: 45960-47147 bp Ori: OIX16340.1 Feature: domain Description: PRK10473 Location: 45963-47139 bp Feature: domain Description: PRK10473 Location: 45963 -4713 9 bp Feature: gene Location: 48048-48983 bp Ori: OIX16341.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48159-48744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48159-48744 bp Feature: gene Location: 48983-49945 bp Feature: gene Location: 50270-51412 bp Ori: OIX16343.1 Feature: domain Description: PRK09692 Location: 50291-51350 bp Feature: domain Description: PRK09692 Location: 50291-513 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: MEJA01000122.1 Salmonella enterica strain CFSAN039514 scaffold_67, whole genome shotgun sequence (8655 bp)
Overview 1 RT 1: 2271-6005 bp Neighborhood of RT #1 [2271, 6577] RVT_N RVT-GII PBP2_GluR0 rve Feature: gene Location: 2271-2501 bp Feature: gene Location: 2667-2936 bp Feature: gene Location: 2933-3800 bp Feature: domain Description: RVT_N Location: 2996-3239 bp Feature: domain Description: RVT_N Location: 2996-3239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284 -34 88 bp Feature: gene Location: 4177-5232 bp Ori: OIX07333.1 Feature: domain Description: PBP2_GluR0 Location: 4252-5230 bp Feature: domain Description: PBP2_GluR0 Location: 4 252-5230 bp Feature: gene Location: 5570-6577 bp Feature: domain Description: rve Location: 5645-6005 bp Feature: domain Description: rve Location: 564 5-6005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PBP2_GluR0 (cd00997), rve (pfam00665)

Seq: MEJA01000138.1 Salmonella enterica strain CFSAN039514 scaffold_81, whole genome shotgun sequence (2845 bp)
Overview 1 RT 1: 1-1909 bp Neighborhood of RT #1 [1, 2829] COG3547 RVT-UG4 Big_1 Big_1 Feature: gene Location: 1-799 bp Ori: OIX06600.1 Feature: domain Description: COG3547 Location: 19-781 bp Feature: domain Description: COG35 47 Location: 19-781 bp Feature: gene Location: 866-1072 bp Feature: gene Location: 1073-1369 bp Ori: OIX06602.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1079-1247 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1079-1247 bp Feature: gene Location: 1444-2829 bp Ori: OIX06603.1 Feature: domain Description: Big_1 Location: 1447-1606 bp Feature: domain Description: Big_1 Location: 1447-1606 bp Feature: domain Description: Big_1 Location: 1747-1909 bp Feature: domain Description: Big_1 Location: 1747-1909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG4, Big_1 (pfam02369)