myRT

myRT report for GCA_001879785.1_ASM187978v1

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Seq: MEJK01000009.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039516 scaffold_16, whole genome shotgun sequence (82930 bp)
Overview 1 RT 1: 31771-38146 bp Neighborhood of RT #1 [31771, 38151] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 31771-32913 bp Ori: OIW42387.1 Feature: domain Description: PRK09692 Location: 31792-32851 bp Feature: domain Description: PRK09692 Location: 31 792-32851 bp Feature: gene Location: 33238-34200 bp Feature: gene Location: 34200-35135 bp Ori: OIW42389.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34311-34896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3431 1 -34896 bp Feature: gene Location: 36036-37223 bp Ori: OIW42390.1 Feature: domain Description: PRK10473 Location: 36039-37215 bp Feature: domain Description: PRK1 0473 Location: 36039-3721 5 bp Feature: gene Location: 37192-38151 bp Ori: OIW42391.1 Feature: domain Description: PRK10216 Location: 37195-38146 bp Feature: domain Description: PRK1 021 6 Location: 371 95-381 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: MEJK01000038.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039516 scaffold_7, whole genome shotgun sequence (250749 bp)
Overview 1 RT 1: 241012-246918 bp Neighborhood of RT #1 [241012, 246918] DUF4062 RVT-AbiP2 HTH_36 Feature: gene Location: 241012-241593 bp Feature: gene Location: 241643-242968 bp Ori: OIW36975.1 Feature: domain Description: DUF4062 Location: 241664-241907 bp Feature: domain Description: DUF4062 Location: 2 41664-2 41907 bp Feature: gene Location: 243367-244866 bp Ori: OIW36959.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 243799-244255 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 43799-2 442 55 bp Feature: gene Location: 245074-245583 bp Ori: OIW36960.1 Feature: domain Description: HTH_36 Location: 245260-245404 bp Feature: domain Description: HTH_36 Location: 2 452 60-2 45404 bp Feature: gene Location: 246493-246918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), RVT-AbiP2, HTH_36 (pfam13730)