myRT

myRT report for GCA_001879795.1_ASM187979v1

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Seq: MEJJ01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039515 scaffold_10, whole genome shotgun sequence (245677 bp)
Overview 1 RT 1: 241005-245397 bp Neighborhood of RT #1 [241005, 245576] DUF4062 RVT-AbiP2 HTH_36 Feature: gene Location: 241005-241586 bp Feature: gene Location: 241636-242961 bp Ori: OIW44730.1 Feature: domain Description: DUF4062 Location: 241657-241900 bp Feature: domain Description: DUF4062 Location: 241 657-241 900 bp Feature: gene Location: 243360-244859 bp Ori: OIW44720.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 243792-244248 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 243792-244248 bp Feature: gene Location: 245067-245576 bp Ori: OIW44721.1 Feature: domain Description: HTH_36 Location: 245253-245397 bp Feature: domain Description: HTH_36 Location: 245253-245397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), RVT-AbiP2, HTH_36 (pfam13730)

Seq: MEJJ01000007.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039515 scaffold_14, whole genome shotgun sequence (82962 bp)
Overview 1 RT 1: 31803-38178 bp Neighborhood of RT #1 [31803, 38183] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 31803-32945 bp Ori: OIW42901.1 Feature: domain Description: PRK09692 Location: 31824-32883 bp Feature: domain Description: PRK09692 Location: 3182 4-32 883 bp Feature: gene Location: 33270-34232 bp Feature: gene Location: 34232-35167 bp Ori: OIW42903.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34343-34928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34343-3492 8 bp Feature: gene Location: 36068-37255 bp Ori: OIW42904.1 Feature: domain Description: PRK10473 Location: 36071-37247 bp Feature: domain Description: PRK10473 Location: 36071-372 47 bp Feature: gene Location: 37224-38183 bp Ori: OIW42905.1 Feature: domain Description: PRK10216 Location: 37227-38178 bp Feature: domain Description: PRK102 16 Location: 372 2 7-38178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)