myRT

myRT report for GCA_001879845.1_ASM187984v1

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Seq: MEJM01000025.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039520 scaffold_30, whole genome shotgun sequence (15160 bp)
Overview 1 RT 1: 6052-14545 bp Neighborhood of RT #1 [6052, 15061] DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 DUF4158 RVT_N RVT-GII Feature: gene Location: 6052-6447 bp Feature: gene Location: 6724-7023 bp Ori: OIW56313.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 6730-6961 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6730-6961 bp Feature: gene Location: 7573-8907 bp Ori: OIW56314.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7858-8545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7858-8545 bp Feature: gene Location: 9481-11061 bp Ori: OIW56315.1 Feature: domain Description: Glyco_hydro_79n Location: 9766-10591 bp Feature: domain Description: Glyco_hydro_79n Location: 9766-1 0591 bp Feature: gene Location: 11242-11865 bp Ori: OIW56316.1 Feature: domain Description: SR_Res_par Location: 11257-11683 bp Feature: domain Description: SR_Res_par Location: 1 1 257-1 1 683 bp Feature: domain Description: HTH_7 Location: 11719-11839 bp Feature: domain Description: HTH_7 Location: 1 1 71 9-1 1 839 bp Feature: gene Location: 11895-12791 bp Feature: domain Description: DUF4158 Location: 11910-12411 bp Feature: domain Description: DUF41 58 Location: 1 1 91 0-1 241 1 bp Feature: gene Location: 13579-15061 bp Feature: domain Description: RVT_N Location: 13630-13873 bp Feature: domain Description: RVT_N Location: 1 3630-1 3873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13918-14545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 391 8-1 4545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Glyco_hydro_79n (pfam03662), SR_Res_par (cd03767), HTH_7 (pfam02796), DUF4158 (pfam13700), RVT_N (pfam13655)

Seq: MEJM01000010.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039520 scaffold_17, whole genome shotgun sequence (89102 bp)
Overview 1 RT 1: 37700-44075 bp Neighborhood of RT #1 [37700, 44080] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 37700-38842 bp Ori: OIW60604.1 Feature: domain Description: PRK09692 Location: 37721-38780 bp Feature: domain Description: PRK09692 Location: 3772 1-38780 bp Feature: gene Location: 39167-40129 bp Feature: gene Location: 40129-41064 bp Ori: OIW60606.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40240-40825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 402 40-4082 5 bp Feature: gene Location: 41965-43152 bp Ori: OIW60607.1 Feature: domain Description: PRK10473 Location: 41968-43144 bp Feature: domain Description: PRK10473 Location: 41968-43144 bp Feature: gene Location: 43121-44080 bp Ori: OIW60608.1 Feature: domain Description: PRK10216 Location: 43124-44075 bp Feature: domain Description: PRK102 16 Location: 4312 4-44075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: MEJM01000031.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039520 scaffold_36, whole genome shotgun sequence (8011 bp)
Overview 1 RT 1: 1-7253 bp Neighborhood of RT #1 [1, 7253] COG3547 RVT-UG4 IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Feature: gene Location: 1-799 bp Ori: OIW55132.1 Feature: domain Description: COG3547 Location: 19-781 bp Feature: domain Description: COG3 547 Location: 19-781 bp Feature: gene Location: 866-1072 bp Feature: gene Location: 1073-1369 bp Ori: OIW55134.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1079-1247 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1079-1247 bp Feature: gene Location: 1444-6996 bp Ori: OIW55135.1 Feature: domain Description: IAT_beta Location: 1927-2788 bp Feature: domain Description: IAT_beta Location: 1927-2788 bp Feature: domain Description: Invasin_D3 Location: 3118-3478 bp Feature: domain Description: Invasin_D3 Location: 3 118-3 478 bp Feature: domain Description: Invasin_D3 Location: 3499-3820 bp Feature: domain Description: Invasin_D3 Location: 3 499-3 820 bp Feature: domain Description: Invasin_D3 Location: 3847-4123 bp Feature: domain Description: Invasin_D3 Location: 3 847-4123 bp Feature: domain Description: Invasin_D3 Location: 4210-4474 bp Feature: domain Description: Invasin_D3 Location: 4210-4474 bp Feature: domain Description: Invasin_D3 Location: 4507-4804 bp Feature: domain Description: Invasin_D3 Location: 4507-4804 bp Feature: domain Description: Invasin_D3 Location: 4909-5155 bp Feature: domain Description: Invasin_D3 Location: 4909-5155 bp Feature: domain Description: Invasin_D3 Location: 5203-5491 bp Feature: domain Description: Invasin_D3 Location: 5203 -5491 bp Feature: domain Description: Invasin_D3 Location: 5551-5782 bp Feature: domain Description: Invasin_D3 Location: 5551-5782 bp Feature: domain Description: Invasin_D3 Location: 5908-6109 bp Feature: domain Description: Invasin_D3 Location: 5908-6109 bp Feature: gene Location: 6993-7253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG4, IAT_beta (pfam11924), Invasin_D3 (pfam09134)

Seq: MEJM01000030.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039520 scaffold_35, whole genome shotgun sequence (8639 bp)
Overview 1 RT 1: 2256-5990 bp Neighborhood of RT #1 [2256, 6562] RVT_N RVT-GII PBP2_GluR0 rve Feature: gene Location: 2256-2486 bp Feature: gene Location: 2652-2921 bp Feature: gene Location: 2918-3785 bp Feature: domain Description: RVT_N Location: 2981-3224 bp Feature: domain Description: RVT_N Location: 2981-3224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-3473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-34 73 bp Feature: gene Location: 4162-5217 bp Ori: OIW55210.1 Feature: domain Description: PBP2_GluR0 Location: 4237-5215 bp Feature: domain Description: PBP2_GluR0 Location: 4 237-5215 bp Feature: gene Location: 5555-6562 bp Feature: domain Description: rve Location: 5630-5990 bp Feature: domain Description: rve Location: 5630-5990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PBP2_GluR0 (cd00997), rve (pfam00665)