myRT

myRT report for GCA_001879905.1_ASM187990v1

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Seq: MEJO01000025.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039522 scaffold_30, whole genome shotgun sequence (2429 bp)
Overview 1 RT 1: 179-2216 bp Neighborhood of RT #1 [179, 2395] RVT-AbiP2 HTH_36 Feature: gene Location: 179-1678 bp Ori: OIW52415.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 611-1067 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 61 1 -1 067 bp Feature: gene Location: 1886-2395 bp Ori: OIW52416.1 Feature: domain Description: HTH_36 Location: 2072-2216 bp Feature: domain Description: HTH_36 Location: 2072-221 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_36 (pfam13730)

Seq: MEJO01000011.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039522 scaffold_18, whole genome shotgun sequence (82922 bp)
Overview 1 RT 1: 31763-38138 bp Neighborhood of RT #1 [31763, 38143] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 31763-32905 bp Ori: OIW55162.1 Feature: domain Description: PRK09692 Location: 31784-32843 bp Feature: domain Description: PRK09692 Location: 31784-32 843 bp Feature: gene Location: 33230-34192 bp Feature: gene Location: 34192-35127 bp Ori: OIW55164.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34303-34888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34303-34888 bp Feature: gene Location: 36028-37215 bp Ori: OIW55165.1 Feature: domain Description: PRK10473 Location: 36031-37207 bp Feature: domain Description: PRK10473 Location: 36031-372 07 bp Feature: gene Location: 37184-38143 bp Ori: OIW55166.1 Feature: domain Description: PRK10216 Location: 37187-38138 bp Feature: domain Description: PRK102 16 Location: 37187-38138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)