myRT

myRT report for GCA_001879975.1_ASM187997v1

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Seq: MEJZ01000027.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_23, whole genome shotgun sequence (83423 bp)
Overview 1 RT 1: 45303-51621 bp Neighborhood of RT #1 [45303, 51683] PRK10216 PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 45303-46262 bp Ori: OIX10346.1 Feature: domain Description: PRK10216 Location: 45306-46257 bp Feature: domain Description: PRK1 021 6 Location: 45306-46257 bp Feature: gene Location: 46231-47418 bp Ori: OIX10347.1 Feature: domain Description: PRK10473 Location: 46234-47410 bp Feature: domain Description: PRK1 0473 Location: 46234-4741 0 bp Feature: gene Location: 48319-49254 bp Ori: OIX10348.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48430-49015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48430-4901 5 bp Feature: gene Location: 49254-50216 bp Feature: gene Location: 50541-51683 bp Ori: OIX10350.1 Feature: domain Description: PRK09692 Location: 50562-51621 bp Feature: domain Description: PRK09692 Location: 50562-51 621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: MEJZ01000085.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_76, whole genome shotgun sequence (2715 bp)
Overview 1 RT 1: 1-2701 bp Neighborhood of RT #1 [1, 2701] COG3547 RVT-UG4 Feature: gene Location: 1-764 bp Ori: OIX06585.1 Feature: domain Description: COG3547 Location: 19-763 bp Feature: domain Description: COG3547 Location: 19-763 bp Feature: gene Location: 831-1037 bp Feature: gene Location: 1038-1334 bp Ori: OIX06583.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1044-1212 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1044-12 12 bp Feature: gene Location: 1409-2701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG4

Seq: MEJZ01000052.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_46, whole genome shotgun sequence (13006 bp)
Overview 1 RT 1: 5802-11589 bp Neighborhood of RT #1 [5802, 11615] DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 Feature: gene Location: 5802-6197 bp Feature: gene Location: 6474-6773 bp Ori: OIX07897.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 6480-6711 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6480-6711 bp Feature: gene Location: 7323-8657 bp Ori: OIX07898.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7608-8295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7608-8295 bp Feature: gene Location: 9231-10811 bp Ori: OIX07899.1 Feature: domain Description: Glyco_hydro_79n Location: 9516-10341 bp Feature: domain Description: Glyco_hydro_79n Location: 9516-103 41 bp Feature: gene Location: 10992-11615 bp Ori: OIX07900.1 Feature: domain Description: SR_Res_par Location: 11007-11433 bp Feature: domain Description: SR_Res_par Location: 11007-1143 3 bp Feature: domain Description: HTH_7 Location: 11469-11589 bp Feature: domain Description: HTH_7 Location: 11469-11589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Glyco_hydro_79n (pfam03662), SR_Res_par (cd03767), HTH_7 (pfam02796)

Seq: MEJZ01000044.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_39, whole genome shotgun sequence (27352 bp)
Overview 1 RT 1: 16-2251 bp Neighborhood of RT #1 [16, 2298] RVT_N RVT-GII COG4683 HTH_XRE Feature: gene Location: 16-201 bp Feature: gene Location: 780-1358 bp Ori: OIX08571.1 Feature: domain Description: RVT_N Location: 834-1077 bp Feature: domain Description: RVT_N Location: 834 -1077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122-1302 bp Feature: gene Location: 1647-1997 bp Ori: OIX08572.1 Feature: domain Description: COG4683 Location: 1650-1992 bp Feature: domain Description: COG4 683 Location: 1650-1992 bp Feature: gene Location: 1999-2298 bp Ori: OIX08573.1 Feature: domain Description: HTH_XRE Location: 2092-2251 bp Feature: domain Description: HTH_XRE Location: 2092-2251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4683 (Uncharacterized protein ), HTH_XRE (smart00530)

Seq: MEJZ01000073.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_65, whole genome shotgun sequence (4122 bp)
Overview 1 RT 1: 2185-3402 bp Neighborhood of RT #1 [2185, 3714] RVT_N RVT-GII Feature: gene Location: 2185-2415 bp Feature: gene Location: 2581-2850 bp Feature: gene Location: 2847-3714 bp Feature: domain Description: RVT_N Location: 2910-3153 bp Feature: domain Description: RVT_N Location: 2910-315 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3198-3402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3198-3402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: MEJZ01000092.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039540 contig-250_82, whole genome shotgun sequence (2094 bp)
Overview 1 RT 1: 107-1358 bp Neighborhood of RT #1 [107, 1588] RVT_N RVT-GII GIIM Feature: gene Location: 107-1588 bp Ori: OIX04976.1 Feature: domain Description: RVT_N Location: 158-401 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446 -1073 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1358 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)