myRT

myRT report for GCA_001880005.1_ASM188000v1

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Seq: MEJR01000009.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039527 scaffold_16, whole genome shotgun sequence (82962 bp)
Overview 1 RT 1: 31803-38178 bp Neighborhood of RT #1 [31803, 38183] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 31803-32945 bp Ori: OIW68439.1 Feature: domain Description: PRK09692 Location: 31824-32883 bp Feature: domain Description: PRK09692 Location: 31 824-32883 bp Feature: gene Location: 33270-34232 bp Feature: gene Location: 34232-35167 bp Ori: OIW68441.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34343-34928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34343-34928 bp Feature: gene Location: 36068-37255 bp Ori: OIW68442.1 Feature: domain Description: PRK10473 Location: 36071-37247 bp Feature: domain Description: PRK1 0473 Location: 36071 -37247 bp Feature: gene Location: 37224-38183 bp Ori: OIW68443.1 Feature: domain Description: PRK10216 Location: 37227-38178 bp Feature: domain Description: PRK1 021 6 Location: 37227-381 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: MEJR01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039527 scaffold_1, whole genome shotgun sequence (521896 bp)
Overview 1 RT 1: 517275-521667 bp Neighborhood of RT #1 [517275, 521846] DUF4062 RVT-AbiP2 HTH_36 Feature: gene Location: 517275-517856 bp Feature: gene Location: 517906-519231 bp Ori: OIW72015.1 Feature: domain Description: DUF4062 Location: 517927-518170 bp Feature: domain Description: DUF4062 Location: 51792 7-518170 bp Feature: gene Location: 519630-521129 bp Ori: OIW71990.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 520062-520518 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 52 0062 -52 0518 bp Feature: gene Location: 521337-521846 bp Ori: OIW71991.1 Feature: domain Description: HTH_36 Location: 521523-521667 bp Feature: domain Description: HTH_36 Location: 52 152 3-52 1667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), RVT-AbiP2, HTH_36 (pfam13730)