myRT

myRT report for GCA_001880035.1_ASM188003v1

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Seq: MEJU01000042.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039530 scaffold_46, whole genome shotgun sequence (3105 bp)
Overview 1 RT 1: 232-2169 bp Neighborhood of RT #1 [232, 3089] COG3547 RVT-UG4 Big_1 Big_1 Feature: gene Location: 232-1059 bp Feature: domain Description: COG3547 Location: 250-1060 bp Feature: domain Description: COG3547 Location: 250-1 060 bp Feature: gene Location: 1126-1332 bp Feature: gene Location: 1333-1629 bp Ori: OIW82799.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1339-1507 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 339-1 507 bp Feature: gene Location: 1704-3089 bp Ori: OIW82800.1 Feature: domain Description: Big_1 Location: 1707-1866 bp Feature: domain Description: Big_1 Location: 1 707-1 866 bp Feature: domain Description: Big_1 Location: 2007-2169 bp Feature: domain Description: Big_1 Location: 2007-21 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG4, Big_1 (pfam02369)

Seq: MEJU01000027.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039530 scaffold_32, whole genome shotgun sequence (14367 bp)
Overview 1 RT 1: 10447-14038 bp Neighborhood of RT #1 [10447, 14268] COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 10447-10635 bp Feature: gene Location: 10884-11879 bp Feature: domain Description: COG3547 Location: 10902-11865 bp Feature: domain Description: COG3547 Location: 10902 -11865 bp Feature: gene Location: 12787-14268 bp Ori: OIW85069.1 Feature: domain Description: RVT_N Location: 12838-13081 bp Feature: domain Description: RVT_N Location: 12 838-13081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13126-13753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1312 6-13753 bp Feature: domain Description: GIIM Note: maturase Location: 13813-14038 bp Feature: domain Description: GIIM Note: maturase Location: 13813-14038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MEJU01000011.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039530 scaffold_18, whole genome shotgun sequence (83194 bp)
Overview 1 RT 1: 32965-38163 bp Neighborhood of RT #1 [32965, 38168] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 32965-33192 bp Feature: gene Location: 33255-34217 bp Feature: gene Location: 34217-35152 bp Ori: OIW87164.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34328-34913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 43 28-3 4913 bp Feature: gene Location: 36053-37240 bp Ori: OIW87165.1 Feature: domain Description: PRK10473 Location: 36056-37232 bp Feature: domain Description: PRK10473 Location: 3 6056-3 723 2 bp Feature: gene Location: 37209-38168 bp Ori: OIW87166.1 Feature: domain Description: PRK10216 Location: 37212-38163 bp Feature: domain Description: PRK10216 Location: 3 7212-3 8163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: MEJU01000028.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039530 scaffold_33, whole genome shotgun sequence (13092 bp)
Overview 1 RT 1: 6033-11820 bp Neighborhood of RT #1 [6033, 11846] DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 Feature: gene Location: 6033-6428 bp Feature: gene Location: 6705-7004 bp Ori: OIW84737.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 6711-6942 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6711-694 2 bp Feature: gene Location: 7554-8888 bp Ori: OIW84738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7839-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7839-8526 bp Feature: gene Location: 9462-11042 bp Ori: OIW84739.1 Feature: domain Description: Glyco_hydro_79n Location: 9747-10572 bp Feature: domain Description: Glyco_hydro_79n Location: 974 7-10572 bp Feature: gene Location: 11223-11846 bp Ori: OIW84740.1 Feature: domain Description: SR_Res_par Location: 11238-11664 bp Feature: domain Description: SR_Res_par Location: 11238-11664 bp Feature: domain Description: HTH_7 Location: 11700-11820 bp Feature: domain Description: HTH_7 Location: 11700-11820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Glyco_hydro_79n (pfam03662), SR_Res_par (cd03767), HTH_7 (pfam02796)

Seq: MEJU01000032.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039530 scaffold_37, whole genome shotgun sequence (8655 bp)
Overview 1 RT 1: 2271-6005 bp Neighborhood of RT #1 [2271, 6577] RVT_N RVT-GII PBP2_GluR0 rve Feature: gene Location: 2271-2501 bp Feature: gene Location: 2667-2936 bp Feature: gene Location: 2933-3800 bp Feature: domain Description: RVT_N Location: 2996-3239 bp Feature: domain Description: RVT_N Location: 2996-3239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3488 bp Feature: gene Location: 4177-5232 bp Ori: OIW84265.1 Feature: domain Description: PBP2_GluR0 Location: 4252-5230 bp Feature: domain Description: PBP2_GluR0 Location: 425 2-5 230 bp Feature: gene Location: 5570-6577 bp Feature: domain Description: rve Location: 5645-6005 bp Feature: domain Description: rve Location: 5 645 -6005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PBP2_GluR0 (cd00997), rve (pfam00665)