myRT

myRT report for GCA_001880085.1_ASM188008v1

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Seq: MEJV01000107.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039531 scaffold_9, whole genome shotgun sequence (185569 bp)
Overview 1 RT 1: 44788-51106 bp Neighborhood of RT #1 [44788, 51168] PRK10216 PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 44788-45747 bp Feature: domain Description: PRK10216 Location: 44791-45742 bp Feature: domain Description: PRK1 021 6 Location: 44791 -45742 bp Feature: gene Location: 45716-46903 bp Feature: domain Description: PRK10473 Location: 45719-46895 bp Feature: domain Description: PRK1 0473 Location: 4571 9-46895 bp Feature: gene Location: 47804-48739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47915-48500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4791 5-48500 bp Feature: gene Location: 48739-49701 bp Feature: gene Location: 50026-51168 bp Feature: domain Description: PRK09692 Location: 50047-51106 bp Feature: domain Description: PRK09692 Location: 50047-51 1 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: MEJV01000058.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039531 scaffold_45, whole genome shotgun sequence (13867 bp)
Overview 1 RT 1: 7518-11252 bp Neighborhood of RT #1 [7518, 11824] RVT_N RVT-GII PBP2_GluR0 rve Feature: gene Location: 7518-7748 bp Feature: gene Location: 7914-8183 bp Feature: gene Location: 8180-9047 bp Feature: RT Description: RVT_N Location: 8243-8486 bp Feature: RT Description: RVT_N Location: 82 43-8486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8531-8726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8531-872 6 bp Feature: gene Location: 9424-10479 bp Feature: domain Description: PBP2_GluR0 Location: 9499-10477 bp Feature: domain Description: PBP2 _GluR0 Location: 9499-10477 bp Feature: gene Location: 10817-11824 bp Feature: domain Description: rve Location: 10892-11252 bp Feature: domain Description: rve Location: 10892 -112 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT_N (pfam13655), RVT-GII, PBP2_GluR0 (cd00997)

Seq: MEJV01000062.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039531 scaffold_49, whole genome shotgun sequence (9624 bp)
Overview 1 RT 1: 3778-8555 bp Neighborhood of RT #1 [3778, 8560] PRK13710 Caudo_TAP RVT_N RVT-GII GIIM DDE_Tnp_Tn3 ParE_toxin Feature: gene Location: 3778-3996 bp Feature: domain Description: PRK13710 Location: 3781-3994 bp Feature: domain Description: PRK13 710 Location: 3 781-3 994 bp Feature: gene Location: 4382-4630 bp Feature: domain Description: Caudo_TAP Location: 4400-4622 bp Feature: domain Description: Caudo_TAP Location: 4400-4622 bp Feature: gene Location: 5564-7045 bp Feature: RT Description: RVT_N Location: 5615-5858 bp Feature: RT Description: RVT_N Location: 5615-5858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5903-6530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5903 -653 0 bp Feature: domain Description: GIIM Note: maturase Location: 6590-6815 bp Feature: domain Description: GIIM Note: maturase Location: 6590-6815 bp Feature: gene Location: 7657-8073 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7702-7993 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7702-7993 bp Feature: gene Location: 8285-8560 bp Feature: domain Description: ParE_toxin Location: 8294-8555 bp Feature: domain Description: ParE_toxin Location: 8294-8555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13710 (type II toxin-antitoxin system antitoxin CcdA), Caudo_TAP (pfam02413), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), ParE_toxin (pfam05016)