myRT

myRT report for GCA_001880825.1_ASM188082v1

Download annotations/find similar RTs

Seq: MCOP01000188.1 Citrobacter freundii strain CF8_ST22 NODE_72_length_4256_cov_45.7672_ID_1653, whole genome shotgun sequence (4256 bp)
Overview 1 RT 1: 105-4155 bp Neighborhood of RT #1 [105, 4163] YbxI Arr-ms RVT-GII GIIM DHFR Feature: gene Location: 105-905 bp Ori: OIY13319.1 Feature: domain Description: YbxI Location: 147-885 bp Feature: domain Description: YbxI Location: 1 47-885 bp Feature: gene Location: 1201-1653 bp Ori: OIY13320.1 Feature: domain Description: Arr-ms Location: 1261-1567 bp Feature: domain Description: Arr-ms Location: 1 261 -1 567 bp Feature: gene Location: 2287-3618 bp Ori: OIY13321.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566-3184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566-31 84 bp Feature: domain Description: GIIM Note: maturase Location: 3226-3451 bp Feature: domain Description: GIIM Note: maturase Location: 3226-3451 bp Feature: gene Location: 3690-4163 bp Ori: OIY13322.1 Feature: domain Description: DHFR Location: 3699-4155 bp Feature: domain Description: DHFR Location: 3699-41 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbxI (COG2602), Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388), DHFR (cl17279)

Seq: MCOP01000141.1 Citrobacter freundii strain CF8_ST22 NODE_2_length_294088_cov_17.9216_ID_1513, whole genome shotgun sequence (294088 bp)
Overview 1 RT 1: 202290-208296 bp Neighborhood of RT #1 [202290, 208355] PRK11462 PRK09692 RVT-UG15 Psu PRK09678 Feature: gene Location: 202290-203672 bp Ori: OIY16638.1 Feature: domain Description: PRK11462 Location: 202293-203670 bp Feature: domain Description: PRK11462 Location: 2 02 2 93-2 03670 bp Feature: gene Location: 204219-205385 bp Ori: OIY16639.1 Feature: domain Description: PRK09692 Location: 204225-205371 bp Feature: domain Description: PRK09692 Location: 2 042 2 5-2 05371 bp Feature: gene Location: 205401-207023 bp Ori: OIY16640.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 205812-206235 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2 05812 -2 062 35 bp Feature: gene Location: 207527-208093 bp Ori: OIY16641.1 Feature: domain Description: Psu Location: 207545-208088 bp Feature: domain Description: Psu Location: 2 07545-2 08088 bp Feature: gene Location: 208110-208355 bp Ori: OIY16642.1 Feature: domain Description: PRK09678 Location: 208113-208296 bp Feature: domain Description: PRK09678 Location: 2 08113-2 082 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11462 (putative transporter; Provisional), PRK09692 (Integrase; provisional), RVT-UG15, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)