myRT

myRT report for GCA_001880915.1_ASM188091v1

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Seq: MDDA01000158.1 Citrobacter freundii strain CF_15_ST_94 NODE_7_length_230998_cov_19.4668_ID_1764, whole genome shotgun sequence (230998 bp)
Overview 1 RT 1: 41007-46647 bp Neighborhood of RT #1 [41007, 46781] TIGR02646 COG3950 RVT-Retrons PRK00507 YdcF-like Feature: gene Location: 41007-41657 bp Ori: OIZ50001.1 Feature: domain Description: TIGR02646 Location: 41073-41472 bp Feature: domain Description: TIGR02646 Location: 41 073-41 472 bp Feature: gene Location: 41660-43312 bp Ori: OIZ50002.1 Feature: domain Description: COG3950 Location: 41858-43274 bp Feature: domain Description: COG3950 Location: 41 858-43274 bp Feature: gene Location: 43309-44244 bp Ori: OIZ50003.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43411-44011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4341 1 -4401 1 bp Feature: gene Location: 44820-45539 bp Ori: OIZ50159.1 Feature: domain Description: PRK00507 Location: 44826-45462 bp Feature: domain Description: PRK00507 Location: 44826-45462 bp Feature: gene Location: 46011-46781 bp Ori: OIZ50004.1 Feature: domain Description: YdcF-like Location: 46161-46647 bp Feature: domain Description: YdcF-like Location: 461 61 -46647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK00507 (deoxyribose-phosphate aldolase; Provisional), YdcF-like (cl00630)

Seq: MDDA01000118.1 Citrobacter freundii strain CF_15_ST_94 NODE_43_length_16204_cov_41.4355_ID_1836, whole genome shotgun sequence (16204 bp)
Overview 1 RT 1: 131-4813 bp Neighborhood of RT #1 [131, 4824] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 131-1317 bp Feature: gene Location: 1419-1877 bp Feature: domain Description: PHA02517 Location: 1422-1869 bp Feature: domain Description: PHA02 517 Location: 142 2 -1869 bp Feature: gene Location: 1958-3466 bp Ori: OIZ54108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2216-2948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 16-2 948 bp Feature: domain Description: GIIM Note: maturase Location: 3023-3221 bp Feature: domain Description: GIIM Note: maturase Location: 302 3-32 2 1 bp Feature: gene Location: 4073-4498 bp Ori: OIZ54109.1 Feature: domain Description: PHA02517 Location: 4094-4433 bp Feature: domain Description: PHA02 517 Location: 4094-4433 bp Feature: gene Location: 4540-4824 bp Ori: OIZ54110.1 Feature: domain Description: InsE Location: 4552-4813 bp Feature: domain Description: InsE Location: 4552 -4813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)