myRT

myRT report for GCA_001882505.1_ASM188250v1

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Seq: MEBF01000022.1 Burkholderia ubonensis strain MSMB0258b Contig_29, whole genome shotgun sequence (69216 bp)
Overview 1 RT 1: 40600-44576 bp Neighborhood of RT #1 [40600, 44576] MoxR DUF3717 RVT-GII GIIM Feature: gene Location: 40600-41625 bp Feature: domain Description: MoxR Location: 40663-41062 bp Feature: domain Description: MoxR Location: 40663-41 062 bp Feature: gene Location: 41750-42001 bp Feature: domain Description: DUF3717 Location: 41792-41993 bp Feature: domain Description: DUF371 7 Location: 41 792-41 993 bp Feature: gene Location: 42286-43650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42619-43234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4261 9-43234 bp Feature: domain Description: GIIM Note: maturase Location: 43291-43507 bp Feature: domain Description: GIIM Note: maturase Location: 43291 -43507 bp Feature: gene Location: 43902-44090 bp Feature: gene Location: 44112-44576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), DUF3717 (pfam12512), RVT-GII, GIIM (pfam08388)

Seq: MEBF01000006.1 Burkholderia ubonensis strain MSMB0258b Contig_14, whole genome shotgun sequence (196716 bp)
Overview 1 RT 1: 189-7059 bp Neighborhood of RT #1 [189, 7070] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 189-968 bp Feature: domain Description: PRK07533 Location: 207-963 bp Feature: domain Description: PRK07533 Location: 2 07-963 bp Feature: gene Location: 1259-3517 bp Feature: domain Description: DUF3141 Location: 1385-3116 bp Feature: domain Description: DUF3141 Location: 1385-3116 bp Feature: gene Location: 3766-5115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4231-4867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 31-4867 bp Feature: gene Location: 5418-5804 bp Feature: domain Description: VOC Location: 5433-5754 bp Feature: domain Description: VOC Location: 5433-5754 bp Feature: gene Location: 6243-7070 bp Feature: domain Description: Cupin_6 Location: 6252-6711 bp Feature: domain Description: Cupin_6 Location: 62 52 -6711 bp Feature: domain Description: AraC Location: 6720-7059 bp Feature: domain Description: AraC Location: 672 0-7059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: MEBF01000064.1 Burkholderia ubonensis strain MSMB0258b Contig_9, whole genome shotgun sequence (771055 bp)
Overview 1 RT 1: 42732-46988 bp Neighborhood of RT #1 [42732, 47062] INT_Rci_Hp1_C HTH_XRE RVT-Retrons Phage_int_SAM_1 INT_C_like_6 DUF2513 Feature: gene Location: 42732-43859 bp Feature: domain Description: INT_Rci_Hp1_C Location: 43299-43824 bp Feature: domain Description: INT_Rci_Hp1_C Location: 43 299-43 824 bp Feature: gene Location: 44433-44744 bp Feature: domain Description: HTH_XRE Location: 44445-44616 bp Feature: domain Description: HTH_XRE Location: 44445-44616 bp Feature: gene Location: 44845-45720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44923-45457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44923 -45457 bp Feature: gene Location: 45724-46686 bp Feature: domain Description: Phage_int_SAM_1 Location: 45841-46039 bp Feature: domain Description: Phage_int_SAM_1 Location: 45841-4603 9 bp Feature: domain Description: INT_C_like_6 Location: 46129-46669 bp Feature: domain Description: INT_C_like_6 Location: 46129-46669 bp Feature: gene Location: 46679-47062 bp Feature: domain Description: DUF2513 Location: 46685-46988 bp Feature: domain Description: DUF2513 Location: 46685-46988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), HTH_XRE (smart00530), RVT-Retrons, Phage_int_SAM_1 (pfam02899), INT_C_like_6 (cd01196), DUF2513 (pfam10711)