myRT

myRT report for GCA_001882545.1_ASM188254v1

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Seq: MEBI01000040.1 Burkholderia ubonensis strain MSMB0668 Contig_45, whole genome shotgun sequence (8985 bp)
Overview 1 RT 1: 1786-8584 bp Neighborhood of RT #1 [1786, 8835] TamB COG3547 RVT-GII GIIM zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 1786-5859 bp Feature: domain Description: TamB Location: 1873-5794 bp Feature: domain Description: TamB Location: 1 873-5794 bp Feature: gene Location: 6495-7532 bp Feature: domain Description: COG3547 Location: 6510-7476 bp Feature: domain Description: COG3547 Location: 651 0-7476 bp Feature: gene Location: 7670-8260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7709-7841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7709-7841 bp Feature: domain Description: GIIM Note: maturase Location: 7898-8120 bp Feature: domain Description: GIIM Note: maturase Location: 7898-81 20 bp Feature: gene Location: 8191-8835 bp Feature: domain Description: zf-IS66 Location: 8194-8293 bp Feature: domain Description: zf-IS66 Location: 81 94-8293 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8356-8584 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8356-8584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TamB (pfam04357), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: MEBI01000006.1 Burkholderia ubonensis strain MSMB0668 Contig_14, whole genome shotgun sequence (171659 bp)
Overview 1 RT 1: 169453-171149 bp Neighborhood of RT #1 [169453, 171529] CheX REC RVT-GII Feature: gene Location: 169453-170412 bp Feature: domain Description: CheX Location: 169969-170269 bp Feature: domain Description: CheX Location: 169969-1702 69 bp Feature: gene Location: 170455-170820 bp Feature: domain Description: REC Location: 170470-170812 bp Feature: domain Description: REC Location: 170470-170812 bp Feature: gene Location: 170879-171529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170894-171149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170894-171149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII

Seq: MEBI01000016.1 Burkholderia ubonensis strain MSMB0668 Contig_23, whole genome shotgun sequence (62532 bp)
Overview 1 RT 1: 800-7669 bp Neighborhood of RT #1 [800, 7680] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 800-1579 bp Feature: domain Description: PRK07533 Location: 818-1574 bp Feature: domain Description: PRK0753 3 Location: 818-1574 bp Feature: gene Location: 1870-4128 bp Feature: domain Description: DUF3141 Location: 1996-3727 bp Feature: domain Description: DUF3 141 Location: 1996-3 727 bp Feature: gene Location: 4377-5726 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4842-5478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4842-5478 bp Feature: gene Location: 6029-6415 bp Feature: domain Description: VOC Location: 6044-6365 bp Feature: domain Description: VOC Location: 6044-63 65 bp Feature: gene Location: 6853-7680 bp Feature: domain Description: Cupin_6 Location: 6862-7321 bp Feature: domain Description: Cupin_6 Location: 6862-73 21 bp Feature: domain Description: AraC Location: 7330-7669 bp Feature: domain Description: AraC Location: 73 3 0-7669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207), PRK07533 (enoyl- reductase FabI)