myRT

myRT report for GCA_001882745.1_ASM188274v1

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Seq: MEBA01000077.1 Burkholderia ubonensis strain MSMB0166 Contig_52, whole genome shotgun sequence (38829 bp)
Overview 1 RT 1: 418-3562 bp Neighborhood of RT #1 [418, 3585] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 418-642 bp Feature: gene Location: 708-1010 bp Feature: gene Location: 1414-2409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1507-2194 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 507-21 94 bp Feature: gene Location: 2732-3106 bp Feature: domain Description: Avd_like Location: 2759-3065 bp Feature: domain Description: Avd_like Location: 2759-3065 bp Feature: gene Location: 3121-3585 bp Feature: domain Description: DUF1566 Location: 3382-3562 bp Feature: domain Description: DUF1 566 Location: 3382-3562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MEBA01000034.1 Burkholderia ubonensis strain MSMB0166 Contig_13, whole genome shotgun sequence (163022 bp)
Overview 1 RT 1: 1528-7493 bp Neighborhood of RT #1 [1528, 7504] DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 1528-3786 bp Feature: domain Description: DUF3141 Location: 1654-3385 bp Feature: domain Description: DUF3141 Location: 1654-3385 bp Feature: gene Location: 4035-4621 bp Feature: gene Location: 4689-5549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5154-5550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5154-5550 bp Feature: gene Location: 5852-6238 bp Feature: domain Description: VOC Location: 5867-6188 bp Feature: domain Description: VOC Location: 5867-6188 bp Feature: gene Location: 6677-7504 bp Feature: domain Description: AraC Location: 7139-7493 bp Feature: domain Description: AraC Location: 7139-7493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), AraC (COG2207)

Seq: MEBA01000069.1 Burkholderia ubonensis strain MSMB0166 Contig_45, whole genome shotgun sequence (108259 bp)
Overview 1 RT 1: 106251-107947 bp Neighborhood of RT #1 [106251, 108259] CheX REC RVT-GII Feature: gene Location: 106251-107210 bp Feature: domain Description: CheX Location: 106767-107067 bp Feature: domain Description: CheX Location: 106767-107067 bp Feature: gene Location: 107253-107618 bp Feature: domain Description: REC Location: 107268-107610 bp Feature: domain Description: REC Location: 107268-107610 bp Feature: gene Location: 107677-108259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107692-107947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107692-107947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII