myRT

myRT report for GCA_001882755.1_ASM188275v1

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Seq: MEBB01000111.1 Burkholderia ubonensis strain MSMB0169 Contig_199, whole genome shotgun sequence (7461 bp)
Overview 1 RT 1: 5554-7250 bp Neighborhood of RT #1 [5554, 7461] CheX REC RVT-GII Feature: gene Location: 5554-6513 bp Ori: OJB15919.1 Feature: domain Description: CheX Location: 6070-6370 bp Feature: domain Description: CheX Location: 6070-6370 bp Feature: gene Location: 6556-6921 bp Ori: OJB15920.1 Feature: domain Description: REC Location: 6571-6913 bp Feature: domain Description: REC Location: 6571 -691 3 bp Feature: gene Location: 6959-7461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6989-7250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6989-7250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII

Seq: MEBB01000166.1 Burkholderia ubonensis strain MSMB0169 Contig_248, whole genome shotgun sequence (5950 bp)
Overview 1 RT 1: 1839-5950 bp Neighborhood of RT #1 [1839, 5950] NA37 PinE RVT-UG7 Feature: gene Location: 1839-2750 bp Ori: OJB08834.1 Feature: domain Description: NA37 Location: 1842-2703 bp Feature: domain Description: NA37 Location: 1842 -2 703 bp Feature: gene Location: 3084-3689 bp Ori: OJB08835.1 Feature: domain Description: PinE Location: 3087-3669 bp Feature: domain Description: PinE Location: 3087-3669 bp Feature: gene Location: 4050-5690 bp Ori: OJB08836.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4467-4887 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4467-4887 bp Feature: gene Location: 5671-5950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NA37 (pfam04245), PinE (COG1961), RVT-UG7

Seq: MEBB01000457.1 Burkholderia ubonensis strain MSMB0169 Contig_51, whole genome shotgun sequence (35098 bp)
Overview 1 RT 1: 224-7094 bp Neighborhood of RT #1 [224, 7105] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 224-1003 bp Ori: OJA86382.1 Feature: domain Description: PRK07533 Location: 242-998 bp Feature: domain Description: PRK0753 3 Location: 242-998 bp Feature: gene Location: 1294-3552 bp Ori: OJA86383.1 Feature: domain Description: DUF3141 Location: 1420-3151 bp Feature: domain Description: DUF3 141 Location: 1420-3 151 bp Feature: gene Location: 3801-5150 bp Ori: OJA86384.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4266-4902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4266-4902 bp Feature: gene Location: 5453-5839 bp Ori: OJA86385.1 Feature: domain Description: VOC Location: 5468-5789 bp Feature: domain Description: VOC Location: 5468-5789 bp Feature: gene Location: 6278-7105 bp Ori: OJA86386.1 Feature: domain Description: Cupin_6 Location: 6287-6746 bp Feature: domain Description: Cupin_6 Location: 6287-6746 bp Feature: domain Description: AraC Location: 6755-7094 bp Feature: domain Description: AraC Location: 6755-7094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07533 (enoyl- reductase FabI), DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: MEBB01000190.1 Burkholderia ubonensis strain MSMB0169 Contig_27, whole genome shotgun sequence (47379 bp)
Overview 1 RT 1: 43856-46704 bp Neighborhood of RT #1 [43856, 47024] GlpR COG3450 RVT-G2L Feature: gene Location: 43856-44611 bp Ori: OJB06365.1 Feature: domain Description: GlpR Location: 43859-44603 bp Feature: domain Description: GlpR Location: 4 3859-4 4 603 bp Feature: gene Location: 44922-45266 bp Ori: OJB06366.1 Feature: domain Description: COG3450 Location: 44925-45261 bp Feature: domain Description: COG34 50 Location: 4 4 925-4 5261 bp Feature: gene Location: 45828-47024 bp Ori: OJB06367.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 46050-46704 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 4 6050-4 6704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlpR (COG1349), COG3450 (Predicted enzyme of the cupin superfamily ), RVT-G2L

Seq: MEBB01000140.1 Burkholderia ubonensis strain MSMB0169 Contig_224, whole genome shotgun sequence (13175 bp)
Overview 1 RT 1: 1029-3850 bp Neighborhood of RT #1 [1029, 3850] Avd_like RVT-DGRs Feature: gene Location: 1029-1513 bp Feature: gene Location: 1528-1905 bp Ori: OJB11848.1 Feature: domain Description: Avd_like Location: 1555-1861 bp Feature: domain Description: Avd_like Location: 15 5 5 -1861 bp Feature: gene Location: 2228-3241 bp Ori: OJB11863.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321-3008 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321-3008 bp Feature: gene Location: 3238-3438 bp Feature: gene Location: 3440-3850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs