myRT

myRT report for GCA_001883995.1_ASM188399v1

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Seq: MACE01000069.1 Bacillus paranthracis strain Mn5 contig71, whole genome shotgun sequence (100663 bp)
Overview 1 RT 1: 28487-32599 bp 2 RT 2: 52397-58505 bp 3 RT 3: 86019-99486 bp Neighborhood of RT #1 [28487, 32598] RadC RVT-GII HNHc RadC Neighborhood of RT #2 [52397, 58600] AAA_10 RVT-GII HNHc AAA_10 TcpE Neighborhood of RT #3 [86019, 99515] HTH_XRE RVT-GII DUF3854 RpoD RVT-GII HNHc LPD1 holA Feature: gene Location: 28487-29223 bp Feature: gene Location: 29359-29541 bp Feature: domain Description: RadC Location: 29398-29533 bp Feature: domain Description: RadC Location: 29398-29533 bp Feature: gene Location: 29652-31535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29949-30690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29949-30690 bp Feature: domain Description: HNHc Note: nucleases Location: 31254-31422 bp Feature: domain Description: HNHc Note: nucleases Location: 31 254-31 422 bp Feature: gene Location: 31754-31933 bp Feature: gene Location: 32296-32598 bp Feature: domain Description: RadC Location: 32302-32599 bp Feature: domain Description: RadC Location: 32302-32599 bp Feature: gene Location: 52397-52879 bp Feature: gene Location: 52881-53900 bp Feature: domain Description: AAA_10 Location: 52887-53784 bp Feature: domain Description: AAA_1 0 Location: 52887-53784 bp Feature: gene Location: 54017-55885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54317-55022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5431 7-55022 bp Feature: domain Description: HNHc Note: nucleases Location: 55601-55733 bp Feature: domain Description: HNHc Note: nucleases Location: 55601 -55733 bp Feature: gene Location: 56622-58136 bp Feature: domain Description: AAA_10 Location: 57963-58137 bp Feature: domain Description: AAA_1 0 Location: 57963-581 37 bp Feature: gene Location: 58196-58600 bp Feature: domain Description: TcpE Location: 58232-58505 bp Feature: domain Description: TcpE Location: 58232-58505 bp Feature: gene Location: 86019-86261 bp Feature: domain Description: HTH_XRE Location: 86088-86226 bp Feature: domain Description: HTH_XRE Location: 86088-86226 bp Feature: gene Location: 86263-87813 bp Feature: gene Location: 88873-90695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89167-89395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891 67-89395 bp Feature: gene Location: 90787-91971 bp Feature: domain Description: DUF3854 Location: 91618-91939 bp Feature: domain Description: DUF3854 Location: 91 61 8-91 939 bp Feature: gene Location: 92463-92693 bp Feature: gene Location: 92716-93687 bp Feature: domain Description: RpoD Location: 92809-93628 bp Feature: domain Description: RpoD Location: 92809-93628 bp Feature: gene Location: 93868-94929 bp Feature: gene Location: 95643-97622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95985-96681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95985-96681 bp Feature: domain Description: HNHc Note: nucleases Location: 97341-97473 bp Feature: domain Description: HNHc Note: nucleases Location: 97341 -97473 bp Feature: gene Location: 97817-98494 bp Feature: domain Description: LPD1 Location: 98171-98372 bp Feature: domain Description: LPD1 Location: 981 71 -98372 bp Feature: gene Location: 98520-99515 bp Feature: domain Description: holA Location: 98526-99486 bp Feature: domain Description: holA Location: 98526-99486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RadC (pfam04002), RVT-GII, HNHc (smart00507), AAA_10 (pfam12846), TcpE (pfam12648), HTH_XRE (smart00530), DUF3854 (pfam12965), RpoD (COG0568), LPD1 (pfam18796), holA (TIGR01128)

Seq: MACE01000049.1 Bacillus paranthracis strain Mn5 contig53, whole genome shotgun sequence (803208 bp)
Overview 1 RT 1: 551894-556147 bp Neighborhood of RT #1 [551894, 556794] TnpB_IS66 RVT-GII XerC Feature: gene Location: 551894-552271 bp Feature: domain Description: TnpB_IS66 Location: 551921-552236 bp Feature: domain Description: TnpB_IS66 Location: 55192 1-552 2 36 bp Feature: gene Location: 552268-552588 bp Feature: gene Location: 552787-553473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552790-553381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552 790-553381 bp Feature: gene Location: 553532-554347 bp Feature: gene Location: 554344-556794 bp Feature: domain Description: XerC Location: 555517-556147 bp Feature: domain Description: XerC Location: 555517-556147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, XerC (COG4973)

Seq: MACE01000071.1 Bacillus paranthracis strain Mn5 contig73, whole genome shotgun sequence (68097 bp)
Overview 1 RT 1: 6663-12570 bp Neighborhood of RT #1 [6663, 12570] PRTRC_A E1_enzyme_family RVT-GII HNHc Feature: gene Location: 6663-7658 bp Feature: domain Description: PRTRC_A Location: 7197-7536 bp Feature: domain Description: PRTRC_A Location: 7197-753 6 bp Feature: gene Location: 7655-8056 bp Feature: domain Description: E1_enzyme_family Location: 7703-8039 bp Feature: domain Description: E1_enzyme_family Location: 7703 -803 9 bp Feature: gene Location: 8774-10636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9086-9815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9086-9815 bp Feature: domain Description: HNHc Note: nucleases Location: 10373-10523 bp Feature: domain Description: HNHc Note: nucleases Location: 103 73 -10523 bp Feature: gene Location: 10700-11227 bp Feature: gene Location: 11599-12570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_A (TIGR03735), E1_enzyme_family (cl22428), RVT-GII, HNHc (smart00507)