myRT

myRT report for GCA_001884045.1_ASM188404v1

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Seq: MACF01000078.1 Bacillus mobilis strain 0711P9-1 contig31, whole genome shotgun sequence (100856 bp)
Overview 1 RT 1: 70956-80662 bp Neighborhood of RT #1 [70956, 80662] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 70956-71870 bp Feature: gene Location: 71873-72841 bp Feature: domain Description: TraC-F-type Location: 72293-72767 bp Feature: domain Description: TraC-F-type Location: 72293-72767 bp Feature: gene Location: 73560-75392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73860-74565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73860-74565 bp Feature: domain Description: HNHc Note: nucleases Location: 75144-75276 bp Feature: domain Description: HNHc Note: nucleases Location: 751 44-75276 bp Feature: gene Location: 75509-76651 bp Feature: domain Description: TraC-F-type Location: 75512-76490 bp Feature: domain Description: TraC-F-type Location: 7551 2-76490 bp Feature: gene Location: 76682-80662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: MACF01000008.1 Bacillus mobilis strain 0711P9-1 contig105, whole genome shotgun sequence (2885 bp)
Overview 1 RT 1: 181-2545 bp Neighborhood of RT #1 [181, 2545] RVT-GII HNHc Feature: gene Location: 181-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 -12 37 bp Feature: domain Description: HNHc Note: nucleases Location: 1828-1993 bp Feature: domain Description: HNHc Note: nucleases Location: 182 8-1993 bp Feature: gene Location: 2366-2545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: MACF01000034.1 Bacillus mobilis strain 0711P9-1 contig129, whole genome shotgun sequence (77580 bp)
Overview 1 RT 1: 24852-28153 bp Neighborhood of RT #1 [24852, 28153] DUF4870 INT_ICEBs1_C_like RVT-Retrons Feature: gene Location: 24852-25190 bp Feature: domain Description: DUF4870 Location: 24894-25155 bp Feature: domain Description: DUF4870 Location: 24894-25155 bp Feature: gene Location: 25414-25620 bp Feature: domain Description: INT_ICEBs1_C_like Location: 25420-25567 bp Feature: domain Description: INT_ICEBs1_C_like Location: 25420-25567 bp Feature: gene Location: 25705-26712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25918-26470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25918-26470 bp Feature: gene Location: 26932-27255 bp Feature: gene Location: 27248-28153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), INT_ICEBs1_C_like (cd01189), RVT-Retrons

Seq: MACF01000055.1 Bacillus mobilis strain 0711P9-1 contig148, whole genome shotgun sequence (116221 bp)
Overview 1 RT 1: 108101-115052 bp Neighborhood of RT #1 [108101, 115052] HepA RVT-GII HNHc DEXDc Feature: gene Location: 108101-108814 bp Feature: gene Location: 108831-110480 bp Feature: domain Description: HepA Location: 109692-109926 bp Feature: domain Description: HepA Location: 109692-109926 bp Feature: gene Location: 110574-112373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110877-111579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110877-111579 bp Feature: domain Description: HNHc Note: nucleases Location: 112104-112254 bp Feature: domain Description: HNHc Note: nucleases Location: 112104 -112254 bp Feature: gene Location: 113074-114753 bp Feature: domain Description: DEXDc Location: 113854-114727 bp Feature: domain Description: DEXDc Location: 113854 -114 727 bp Feature: gene Location: 114825-115052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RVT-GII, HNHc (smart00507), DEXDc (smart00487)

Seq: MACF01000096.1 Bacillus mobilis strain 0711P9-1 contig48, whole genome shotgun sequence (28915 bp)
Overview 1 RT 1: 11756-17307 bp 2 RT 2: 23525-28757 bp Neighborhood of RT #1 [11756, 17330] PRK06850 HEPN RVT-GII NT_KNTase_like Neighborhood of RT #2 [23525, 28757] beta_clamp RVT-GII COG4712 Feature: gene Location: 11756-13528 bp Feature: domain Description: PRK06850 Location: 11771-13001 bp Feature: domain Description: PRK0685 0 Location: 11771-13001 bp Feature: gene Location: 13653-14096 bp Feature: domain Description: HEPN Location: 13707-14055 bp Feature: domain Description: HEPN Location: 13707-1405 5 bp Feature: gene Location: 14242-16173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14563-15298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 63-15 298 bp Feature: gene Location: 16170-16373 bp Feature: gene Location: 16932-17330 bp Feature: domain Description: NT_KNTase_like Location: 17007-17307 bp Feature: domain Description: NT_KNTase_like Location: 17007-17307 bp Feature: gene Location: 23525-24637 bp Feature: domain Description: beta_clamp Location: 23528-24632 bp Feature: domain Description: beta_clamp Location: 235 28-24632 bp Feature: gene Location: 24718-25245 bp Feature: gene Location: 25323-27221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25638-26340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 638-26340 bp Feature: gene Location: 27983-28339 bp Feature: domain Description: COG4712 Location: 27992-28334 bp Feature: domain Description: COG4712 Location: 27992-28334 bp Feature: gene Location: 28362-28757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06850 (hypothetical protein; Provisional), HEPN (smart00748), RVT-GII, NT_KNTase_like (cd05403), beta_clamp (cl29549), COG4712 (Uncharacterized protein )

Seq: MACF01000150.1 Bacillus mobilis strain 0711P9-1 contig97, whole genome shotgun sequence (37326 bp)
Overview 1 RT 1: 32608-36359 bp Neighborhood of RT #1 [32608, 36712] Hydrolase_4 HTH_3 TPR TPR_12 RVT_N RVT-GII GIIM Feature: gene Location: 32608-33591 bp Feature: domain Description: Hydrolase_4 Location: 32770-33430 bp Feature: domain Description: Hydrolase_4 Location: 32770-33430 bp Feature: gene Location: 33607-34731 bp Feature: domain Description: HTH_3 Location: 33637-33799 bp Feature: domain Description: HTH_3 Location: 336 37-33799 bp Feature: domain Description: TPR Location: 33847-34150 bp Feature: domain Description: TPR Location: 33847-34150 bp Feature: domain Description: TPR_12 Location: 34402-34489 bp Feature: domain Description: TPR_12 Location: 34402-34489 bp Feature: gene Location: 35066-36712 bp Feature: RT Description: RVT_N Location: 35108-35345 bp Feature: RT Description: RVT_N Location: 35108-35345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35399-36059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35399-36 059 bp Feature: domain Description: GIIM Note: maturase Location: 36128-36359 bp Feature: domain Description: GIIM Note: maturase Location: 36 128-36 359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR (smart00028), TPR_12 (pfam13424), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)