myRT

myRT report for GCA_001885535.1_ASM188553v1

Download annotations/find similar RTs

Seq: MOYO01000001.1 Nocardia seriolae strain CK-14008 contig00001, whole genome shotgun sequence (8263617 bp)
Overview 1 RT 1: 1513965-1520908 bp 2 RT 2: 1759016-1764305 bp 3 RT 3: 2729314-2734254 bp 4 RT 4: 3671294-3675695 bp 5 RT 5: 6202542-6209060 bp 6 RT 6: 6484699-6489841 bp 7 RT 7: 6591318-6599146 bp Neighborhood of RT #1 [1513965, 1520919] YdcF-like MngR RVT-GII GIIM CaiA ACAD Neighborhood of RT #2 [1759016, 1764433] SDR_c RVT-GII GIIM HTH_29 HTH_CRP DDE_3 Neighborhood of RT #3 [2729314, 2734277] DDE_5 DDE_5 RVT-GII COG3393 Neighborhood of RT #4 [3671294, 3675823] InsE PHA02517 RVT-GII GIIM HTH_29 HTH_50 DDE_3 Neighborhood of RT #5 [6202542, 6209060] Nterm_IS4 DDE_5 RVT-GII Intron_maturas2 HNHc DUF4096 Neighborhood of RT #6 [6484699, 6490347] HTH_31 RVT-GII DDE_5 DDE_5 Neighborhood of RT #7 [6591318, 6599148] DDE_5 RVT-GII GIIM PRK09601 Feature: gene Location: 1513965-1514633 bp Ori: OJF78933.1 Feature: domain Description: YdcF-like Location: 1514064-1514427 bp Feature: domain Description: YdcF-like Location: 1 51 4064-1 51 4427 bp Feature: gene Location: 1514645-1515409 bp Ori: OJF78934.1 Feature: domain Description: MngR Location: 1514654-1515389 bp Feature: domain Description: MngR Location: 1 51 4654-1 51 5389 bp Feature: gene Location: 1516325-1517812 bp Ori: OJF78935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516640-1517348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 6640-1 51 7348 bp Feature: domain Description: GIIM Note: maturase Location: 1517423-1517654 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 7423-1 51 7654 bp Feature: gene Location: 1518272-1519510 bp Ori: OJF78936.1 Feature: domain Description: CaiA Location: 1518290-1519496 bp Feature: domain Description: CaiA Location: 1 51 8290-1 51 9496 bp Feature: gene Location: 1519537-1520919 bp Ori: OJF78937.1 Feature: domain Description: ACAD Location: 1519840-1520908 bp Feature: domain Description: ACAD Location: 1 51 9840-1 520908 bp Feature: gene Location: 1759016-1759786 bp Ori: OJF79114.1 Feature: domain Description: SDR_c Location: 1759043-1759769 bp Feature: domain Description: SDR_c Location: 1 759043-1 759769 bp Feature: gene Location: 1760125-1760349 bp Feature: gene Location: 1761143-1762630 bp Ori: OJF79116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761458-1762166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 761 458-1 7621 66 bp Feature: domain Description: GIIM Note: maturase Location: 1762241-1762472 bp Feature: domain Description: GIIM Note: maturase Location: 1 762241 -1 762472 bp Feature: gene Location: 1762808-1763338 bp Feature: gene Location: 1763369-1764433 bp Ori: OJF79118.1 Feature: domain Description: HTH_29 Location: 1763456-1763630 bp Feature: domain Description: HTH_29 Location: 1 763456-1 763630 bp Feature: domain Description: HTH_CRP Location: 1763657-1763750 bp Feature: domain Description: HTH_CRP Location: 1 763657-1 763750 bp Feature: domain Description: DDE_3 Location: 1763867-1764305 bp Feature: domain Description: DDE_3 Location: 1 763867-1 764305 bp Feature: gene Location: 2729314-2730447 bp Ori: OJF79834.1 Feature: domain Description: DDE_5 Location: 2729377-2730004 bp Feature: domain Description: DDE_5 Location: 2729377-2730004 bp Feature: gene Location: 2731062-2732177 bp Ori: OJF79835.1 Feature: domain Description: DDE_5 Location: 2731107-2731734 bp Feature: domain Description: DDE_5 Location: 2731 1 07-2731 734 bp Feature: gene Location: 2732189-2732491 bp Ori: OJF79836.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2732213-2732366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273221 3-2732366 bp Feature: gene Location: 2733002-2733307 bp Feature: gene Location: 2733633-2734277 bp Ori: OJF79838.1 Feature: domain Description: COG3393 Location: 2733873-2734254 bp Feature: domain Description: COG3393 Location: 2733873-2734254 bp Feature: gene Location: 3671294-3671617 bp Ori: OJF80580.1 Feature: domain Description: InsE Location: 3671297-3671603 bp Feature: domain Description: InsE Location: 3671 297-3671 603 bp Feature: gene Location: 3671617-3672543 bp Ori: OJF80581.1 Feature: domain Description: PHA02517 Location: 3671716-3672526 bp Feature: domain Description: PHA0251 7 Location: 3671 71 6-3672526 bp Feature: gene Location: 3672536-3674002 bp Ori: OJF84378.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672830-3673538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672830-3673538 bp Feature: domain Description: GIIM Note: maturase Location: 3673613-3673844 bp Feature: domain Description: GIIM Note: maturase Location: 367361 3-3673844 bp Feature: gene Location: 3674121-3674438 bp Feature: gene Location: 3674759-3675823 bp Ori: OJF80583.1 Feature: domain Description: HTH_29 Location: 3674846-3675020 bp Feature: domain Description: HTH_29 Location: 3674846-3675020 bp Feature: domain Description: HTH_50 Location: 3675068-3675149 bp Feature: domain Description: HTH_50 Location: 3675068-36751 49 bp Feature: domain Description: DDE_3 Location: 3675257-3675695 bp Feature: domain Description: DDE_3 Location: 3675257-3675695 bp Feature: gene Location: 6202542-6203780 bp Feature: domain Description: Nterm_IS4 Location: 6202605-6202893 bp Feature: domain Description: Nterm_IS4 Location: 6202605-6202893 bp Feature: gene Location: 6204157-6205290 bp Ori: OJF82394.1 Feature: domain Description: DDE_5 Location: 6204220-6204847 bp Feature: domain Description: DDE_5 Location: 6204220-6204847 bp Feature: gene Location: 6205595-6207283 bp Ori: OJF84780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205760-6206558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205760-6206558 bp Feature: domain Description: Intron_maturas2 Location: 6206660-6206888 bp Feature: domain Description: Intron_maturas2 Location: 6206660-6206888 bp Feature: domain Description: HNHc Note: nucleases Location: 6207083-6207239 bp Feature: domain Description: HNHc Note: nucleases Location: 6207083-6207239 bp Feature: gene Location: 6208252-6208609 bp Feature: domain Description: DUF4096 Location: 6208285-6208513 bp Feature: domain Description: DUF4096 Location: 6208285-620851 3 bp Feature: gene Location: 6208680-6209060 bp Feature: gene Location: 6484699-6485577 bp Ori: OJF82581.1 Feature: domain Description: HTH_31 Location: 6484735-6484909 bp Feature: domain Description: HTH_31 Location: 6484735-6484909 bp Feature: gene Location: 6486005-6486400 bp Feature: gene Location: 6487020-6487631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6487335-6487632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6487335-6487632 bp Feature: gene Location: 6487681-6488783 bp Feature: domain Description: DDE_5 Location: 6487744-6488368 bp Feature: domain Description: DDE_5 Location: 6487744-6488368 bp Feature: gene Location: 6489130-6490347 bp Ori: OJF82583.1 Feature: domain Description: DDE_5 Location: 6489223-6489841 bp Feature: domain Description: DDE_5 Location: 6489223-6489841 bp Feature: gene Location: 6591318-6592451 bp Ori: OJF82655.1 Feature: domain Description: DDE_5 Location: 6591381-6592008 bp Feature: domain Description: DDE_5 Location: 6591 381 -6592008 bp Feature: gene Location: 6592795-6593484 bp Feature: gene Location: 6593614-6595101 bp Ori: OJF82657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6593929-6594637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6593929-6594637 bp Feature: domain Description: GIIM Note: maturase Location: 6594712-6594943 bp Feature: domain Description: GIIM Note: maturase Location: 659471 2-6594943 bp Feature: gene Location: 6596125-6597144 bp Feature: gene Location: 6598069-6599148 bp Ori: OJF82659.1 Feature: domain Description: PRK09601 Location: 6598075-6599146 bp Feature: domain Description: PRK09601 Location: 6598075-65991 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF-like (cl00630), MngR (COG2188), RVT-GII, GIIM (pfam08388), CaiA (COG1960), ACAD (cl09933), SDR_c (cd05233), HTH_29 (pfam13551), HTH_CRP (smart00419), DDE_3 (pfam13358)
DDE_5 (pfam13546), COG3393 (Predicted acetyltransferase, GNAT family ), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_50 (pfam18024), Nterm_IS4 (pfam13006), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4096 (pfam13340), HTH_31 (pfam13560)
PRK09601 (redox-regulated ATPase YchF)