myRT

myRT report for GCA_001890975.1_ASM189097v1

Download annotations/find similar RTs

Seq: MLAW01000107.1 Roseofilum reptotaenium AO1-A Rreptotaenium_AO1_contig_144_len_2476_cov_1066.2, whole genome shotgun sequence (2476 bp)
Overview 1 RT 1: 644-2351 bp Neighborhood of RT #1 [644, 2389] RVT_N RVT-GII GIIM McrA Feature: gene Location: 644-2389 bp Feature: RT Description: RVT_N Location: 686-932 bp Feature: RT Description: RVT_N Location: 686-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1 664 bp Feature: domain Description: GIIM Note: maturase Location: 1763-1994 bp Feature: domain Description: GIIM Note: maturase Location: 1 763-1 994 bp Feature: domain Description: McrA Location: 2084-2351 bp Feature: domain Description: McrA Location: 2084-2351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: MLAW01000002.1 Roseofilum reptotaenium AO1-A Rreptotaenium_AO1_contig_18_len_274292_cov_428.052, whole genome shotgun sequence (274292 bp)
Overview 1 RT 1: 190836-195857 bp Neighborhood of RT #1 [190836, 195877] RVT-DGRs Avd_like TPR_2 TPR_2 TPR_2 YfmG Feature: gene Location: 190836-191054 bp Feature: gene Location: 191044-191295 bp Feature: gene Location: 191652-192710 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 191862-192504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 191862 -192 504 bp Feature: gene Location: 192707-193057 bp Feature: domain Description: Avd_like Location: 192725-193031 bp Feature: domain Description: Avd_like Location: 192 72 5-193031 bp Feature: gene Location: 193148-195877 bp Feature: domain Description: TPR_2 Location: 194726-194819 bp Feature: domain Description: TPR_2 Location: 19472 6-194819 bp Feature: domain Description: TPR_2 Location: 194822-194918 bp Feature: domain Description: TPR_2 Location: 19482 2 -194918 bp Feature: domain Description: TPR_2 Location: 194924-195008 bp Feature: domain Description: TPR_2 Location: 19492 4-195008 bp Feature: domain Description: YfmG Location: 195068-195857 bp Feature: domain Description: YfmG Location: 195068-195857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), TPR_2 (pfam07719), YfmG (COG1262)

Seq: MLAW01000070.1 Roseofilum reptotaenium AO1-A Rreptotaenium_AO1_contig_102_len_22140_cov_415.14, whole genome shotgun sequence (22140 bp)
Overview 1 RT 1: 10535-16152 bp Neighborhood of RT #1 [10535, 16163] bS6_chloro_cyano Uma2 RVT-GII YkfC HNHc ABC_ATPase PEP-CTERM Feature: gene Location: 10535-10873 bp Feature: domain Description: bS6_chloro_cyano Location: 10556-10826 bp Feature: domain Description: bS6_chloro_cyano Location: 10556-10826 bp Feature: gene Location: 11029-11676 bp Feature: domain Description: Uma2 Location: 11122-11629 bp Feature: domain Description: Uma2 Location: 11122-11629 bp Feature: gene Location: 11678-13042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11681-12254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11681-12254 bp Feature: domain Description: YkfC Location: 12422-12683 bp Feature: domain Description: YkfC Location: 12422-12683 bp Feature: domain Description: HNHc Note: nucleases Location: 12767-12929 bp Feature: domain Description: HNHc Note: nucleases Location: 12767-12929 bp Feature: gene Location: 13714-15429 bp Feature: domain Description: ABC_ATPase Location: 13732-15061 bp Feature: domain Description: ABC_ATPase Location: 13 73 2-15061 bp Feature: gene Location: 15507-16163 bp Feature: domain Description: PEP-CTERM Location: 16083-16152 bp Feature: domain Description: PEP-CTERM Location: 16083 -16152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bS6_chloro_cyano (cd15487), Uma2 (pfam05685), RVT-GII, YkfC (COG3344), HNHc (smart00507), ABC_ATPase (pfam09818), PEP-CTERM

Seq: MLAW01000010.1 Roseofilum reptotaenium AO1-A Rreptotaenium_AO1_contig_34_len_130776_cov_401.654, whole genome shotgun sequence (130776 bp)
Overview 1 RT 1: 39123-45281 bp Neighborhood of RT #1 [39123, 45325] Nuc_deoxyrib_tr RVT-Retrons COG2607 YdcF-like Feature: gene Location: 39123-39716 bp Feature: gene Location: 39738-40202 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 39762-40047 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 39762-4 004 7 bp Feature: gene Location: 40500-41909 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41049-41658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 104 9-4 1658 bp Feature: gene Location: 42849-44144 bp Feature: domain Description: COG2607 Location: 43068-44133 bp Feature: domain Description: COG2607 Location: 4 3068-4 4 133 bp Feature: gene Location: 44291-45325 bp Feature: domain Description: YdcF-like Location: 44741-45281 bp Feature: domain Description: YdcF-like Location: 4 4 74 1-4 5281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, COG2607 (Predicted ATPase, AAA+ superfamily ), YdcF-like (cl00630)