myRT

myRT report for GCA_001891315.1_ASM189131v1

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Seq: MOEY01000073.1 Escherichia coli strain 449 BN4_449_1_(paired)_contig_73, whole genome shotgun sequence (14999 bp)
Overview 1 RT 1: 1-3336 bp Neighborhood of RT #1 [1, 3336] PHA02517 RVT-GII GIIM Feature: gene Location: 1-79 bp Feature: gene Location: 585-971 bp Ori: OJK46870.1 Feature: domain Description: PHA02517 Location: 588-969 bp Feature: domain Description: PHA0251 7 Location: 588-969 bp Feature: gene Location: 1148-2656 bp Ori: OJK46871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406-2138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 406-21 38 bp Feature: domain Description: GIIM Note: maturase Location: 2213-2411 bp Feature: domain Description: GIIM Note: maturase Location: 221 3-241 1 bp Feature: gene Location: 2625-3050 bp Feature: gene Location: 2965-3336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOEY01000009.1 Escherichia coli strain 449 BN4_449_1_(paired)_contig_9, whole genome shotgun sequence (141526 bp)
Overview 1 RT 1: 90056-96059 bp Neighborhood of RT #1 [90056, 96076] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 90056-91390 bp Ori: OJK54614.1 Feature: domain Description: Phage_int_SAM_5 Location: 90425-90662 bp Feature: domain Description: Phage_int_SAM_5 Location: 9042 5-90662 bp Feature: domain Description: INT_C_like_1 Location: 90758-91274 bp Feature: domain Description: INT_C_like_1 Location: 90758-912 74 bp Feature: gene Location: 91659-92843 bp Ori: OJK54615.1 Feature: domain Description: PRK09692 Location: 91665-92820 bp Feature: domain Description: PRK09692 Location: 91665-92 82 0 bp Feature: gene Location: 92836-94464 bp Ori: OJK54616.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 93244-93673 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 932 44-93673 bp Feature: gene Location: 94461-95201 bp Feature: gene Location: 95504-96076 bp Ori: OJK54618.1 Feature: domain Description: Psu Location: 95522-96059 bp Feature: domain Description: Psu Location: 9552 2 -96059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)