myRT

myRT report for GCA_001891375.1_ASM189137v1

Download annotations/find similar RTs

Seq: MOFC01000050.1 Escherichia coli strain 451 BN4_451_1_(paired)_contig_50, whole genome shotgun sequence (141524 bp)
Overview 1 RT 1: 90055-96058 bp Neighborhood of RT #1 [90055, 96075] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 90055-91389 bp Ori: OJK67483.1 Feature: domain Description: Phage_int_SAM_5 Location: 90424-90661 bp Feature: domain Description: Phage_int_SAM_5 Location: 90424-90661 bp Feature: domain Description: INT_C_like_1 Location: 90757-91273 bp Feature: domain Description: INT_C_like_1 Location: 90757-91 273 bp Feature: gene Location: 91658-92842 bp Ori: OJK67484.1 Feature: domain Description: PRK09692 Location: 91664-92819 bp Feature: domain Description: PRK09692 Location: 91 664-9281 9 bp Feature: gene Location: 92835-94463 bp Ori: OJK67485.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 93243-93672 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 93243-93672 bp Feature: gene Location: 94460-95200 bp Feature: gene Location: 95503-96075 bp Ori: OJK67487.1 Feature: domain Description: Psu Location: 95521-96058 bp Feature: domain Description: Psu Location: 95521 -96058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: MOFC01000118.1 Escherichia coli strain 451 BN4_451_1_(paired)_contig_118, whole genome shotgun sequence (14517 bp)
Overview 1 RT 1: 11194-13943 bp Neighborhood of RT #1 [11194, 13945] RVT-GII GIIM PHA02517 Feature: gene Location: 11194-11565 bp Feature: gene Location: 11480-11905 bp Feature: gene Location: 11874-13382 bp Ori: OJK64029.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12132-12864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 132 -12 864 bp Feature: domain Description: GIIM Note: maturase Location: 12939-13137 bp Feature: domain Description: GIIM Note: maturase Location: 12 939-13137 bp Feature: gene Location: 13559-13945 bp Ori: OJK64028.1 Feature: domain Description: PHA02517 Location: 13562-13943 bp Feature: domain Description: PHA02 517 Location: 13562 -13943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)