myRT

myRT report for GCA_001891535.1_ASM189153v1

Download annotations/find similar RTs

Seq: MOFU01000027.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_27, whole genome shotgun sequence (14697 bp)
Overview 1 RT 1: 31-3177 bp Neighborhood of RT #1 [31, 3177] Inovirus_Gp2 RVT-GII Feature: gene Location: 31-594 bp Ori: OJL64096.1 Feature: domain Description: Inovirus_Gp2 Location: 88-529 bp Feature: domain Description: Inovirus_Gp2 Location: 88-529 bp Feature: gene Location: 920-2083 bp Ori: OJL64085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 034-1 721 bp Feature: gene Location: 2070-2306 bp Feature: gene Location: 2944-3177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII

Seq: MOFU01000029.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_29, whole genome shotgun sequence (129495 bp)
Overview 1 RT 1: 57251-61869 bp Neighborhood of RT #1 [57251, 61889] PRK09678 Psu RVT-Retrons PRK09692 Feature: gene Location: 57251-57496 bp Ori: OJL63840.1 Feature: domain Description: PRK09678 Location: 57254-57410 bp Feature: domain Description: PRK09678 Location: 572 54-57410 bp Feature: gene Location: 57513-58079 bp Ori: OJL63841.1 Feature: domain Description: Psu Location: 57531-58074 bp Feature: domain Description: Psu Location: 57531-58074 bp Feature: gene Location: 58403-59893 bp Ori: OJL63842.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59090-59645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59090-59645 bp Feature: gene Location: 59893-60537 bp Feature: gene Location: 60708-61889 bp Ori: OJL63844.1 Feature: domain Description: PRK09692 Location: 60717-61869 bp Feature: domain Description: PRK09692 Location: 60717-61869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: MOFU01000001.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_1, whole genome shotgun sequence (96555 bp)
Overview 1 RT 1: 88858-94721 bp Neighborhood of RT #1 [88858, 94735] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 88858-90114 bp Ori: OJL68578.1 Feature: domain Description: PRK13381 Location: 88864-90079 bp Feature: domain Description: PRK13 3 81 Location: 88864-90079 bp Feature: gene Location: 90111-91472 bp Ori: OJL68579.1 Feature: domain Description: DcuC Location: 90114-91446 bp Feature: domain Description: DcuC Location: 90114-91446 bp Feature: gene Location: 92118-92564 bp Ori: OJL68580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92424-92526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92424-92526 bp Feature: gene Location: 93097-94119 bp Ori: OJL68584.1 Feature: domain Description: Asparaginase_2 Location: 93178-94111 bp Feature: domain Description: Asparaginase_2 Location: 93 178-94111 bp Feature: gene Location: 94457-94735 bp Ori: OJL68581.1 Feature: domain Description: DUF5339 Location: 94520-94721 bp Feature: domain Description: DUF53 3 9 Location: 94520-94721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: MOFU01000054.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_54, whole genome shotgun sequence (2930 bp)
Overview 1 RT 1: 83-1715 bp Neighborhood of RT #1 [83, 1750] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Ori: OJL61523.1 Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 19-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112-134 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)