myRT

myRT report for GCA_001891555.1_ASM189155v1

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Seq: MOFY01000012.1 Escherichia coli strain 678 BN4_678_1_(paired)_contig_12, whole genome shotgun sequence (257291 bp)
Overview 1 RT 1: 10037-13038 bp 2 RT 2: 38194-43368 bp Neighborhood of RT #1 [10037, 13038] InsE PHA02517 RVT-GII GIIM Neighborhood of RT #2 [38194, 43631] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 10037-10272 bp Feature: domain Description: InsE Location: 10052-10238 bp Feature: domain Description: InsE Location: 1 0052-1 0238 bp Feature: gene Location: 10281-10769 bp Feature: domain Description: PHA02517 Location: 10284-10758 bp Feature: domain Description: PHA0251 7 Location: 1 0284-1 0758 bp Feature: gene Location: 10850-12358 bp Ori: OJL74926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11108-11840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 08-1 1 840 bp Feature: domain Description: GIIM Note: maturase Location: 11915-12113 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 91 5-1 21 1 3 bp Feature: gene Location: 12327-12752 bp Feature: gene Location: 12667-13038 bp Feature: gene Location: 38194-38427 bp Feature: gene Location: 39065-39301 bp Feature: gene Location: 39288-40451 bp Ori: OJL74729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39402-40089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39402-40089 bp Feature: gene Location: 40777-41340 bp Ori: OJL74730.1 Feature: domain Description: Inovirus_Gp2 Location: 40834-41275 bp Feature: domain Description: Inovirus_Gp2 Location: 40834-41 275 bp Feature: gene Location: 42198-43631 bp Ori: OJL74731.1 Feature: domain Description: DUF3987 Location: 42291-43368 bp Feature: domain Description: DUF3987 Location: 42291 -43368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: MOFY01000026.1 Escherichia coli strain 678 BN4_678_1_(paired)_contig_26, whole genome shotgun sequence (6675 bp)
Overview 1 RT 1: 871-6380 bp Neighborhood of RT #1 [871, 6505] DUF3560 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 871-2232 bp Ori: OJL71898.1 Feature: domain Description: DUF3560 Location: 1138-1495 bp Feature: domain Description: DUF3560 Location: 1138-1495 bp Feature: gene Location: 2284-2514 bp Feature: gene Location: 3914-5581 bp Ori: OJL71900.1 Feature: domain Description: RVT_N Location: 3962-4199 bp Feature: domain Description: RVT_N Location: 3962 -4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 50-4892 bp Feature: domain Description: GIIM Note: maturase Location: 4943-5177 bp Feature: domain Description: GIIM Note: maturase Location: 4943-5177 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: gene Location: 5895-6086 bp Feature: gene Location: 6083-6505 bp Ori: OJL71902.1 Feature: domain Description: DUF1380 Location: 6086-6380 bp Feature: domain Description: DUF1380 Location: 6086-6380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MOFY01000042.1 Escherichia coli strain 678 BN4_678_1_(paired)_contig_42, whole genome shotgun sequence (91486 bp)
Overview 1 RT 1: 43150-54072 bp Neighborhood of RT #1 [43150, 54089] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43150-43494 bp Feature: gene Location: 43777-44442 bp Ori: OJL71380.1 Feature: domain Description: Resolvase Location: 43798-44215 bp Feature: domain Description: Resolvase Location: 43 798-44215 bp Feature: gene Location: 44710-46416 bp Ori: OJL71381.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44860-45457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44860-45457 bp Feature: gene Location: 46553-47050 bp Feature: gene Location: 47290-47751 bp Ori: OJL71382.1 Feature: domain Description: HTH_XRE Location: 47320-47488 bp Feature: domain Description: HTH_XRE Location: 473 20-47488 bp Feature: gene Location: 47782-48963 bp Ori: OJL71383.1 Feature: domain Description: DUF4062 Location: 47797-48124 bp Feature: domain Description: DUF4062 Location: 47797-48124 bp Feature: gene Location: 49672-50856 bp Ori: OJL71384.1 Feature: domain Description: PRK09692 Location: 49678-50833 bp Feature: domain Description: PRK09692 Location: 49678-5083 3 bp Feature: gene Location: 50849-52477 bp Ori: OJL71385.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51257-51686 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51257-51686 bp Feature: gene Location: 52474-53214 bp Feature: gene Location: 53517-54089 bp Ori: OJL71387.1 Feature: domain Description: Psu Location: 53535-54072 bp Feature: domain Description: Psu Location: 53 53 5-54072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)