myRT

myRT report for GCA_001891625.1_ASM189162v1

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Seq: MOGC01000023.1 Escherichia coli strain 622 BN4_622_1_(paired)_contig_23, whole genome shotgun sequence (91438 bp)
Overview 1 RT 1: 37589-48528 bp Neighborhood of RT #1 [37589, 48528] Psu RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 37589-38161 bp Ori: OJM04740.1 Feature: domain Description: Psu Location: 37607-38144 bp Feature: domain Description: Psu Location: 37607-381 44 bp Feature: gene Location: 38464-39204 bp Feature: gene Location: 39201-40829 bp Ori: OJM04742.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 39609-40038 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 39609-40038 bp Feature: gene Location: 40822-42006 bp Ori: OJM04743.1 Feature: domain Description: PRK09692 Location: 40828-41983 bp Feature: domain Description: PRK09692 Location: 40828-41 983 bp Feature: gene Location: 42715-43896 bp Ori: OJM04744.1 Feature: domain Description: DUF4062 Location: 42730-43057 bp Feature: domain Description: DUF4062 Location: 42730-43057 bp Feature: gene Location: 43927-44388 bp Ori: OJM04745.1 Feature: domain Description: HTH_XRE Location: 43957-44125 bp Feature: domain Description: HTH_XRE Location: 43957-441 25 bp Feature: gene Location: 44628-45125 bp Feature: gene Location: 45262-46968 bp Ori: OJM04746.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45412-46009 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4541 2-46009 bp Feature: gene Location: 47236-47901 bp Ori: OJM04747.1 Feature: domain Description: Resolvase Location: 47257-47674 bp Feature: domain Description: Resolvase Location: 47257-47674 bp Feature: gene Location: 48184-48528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: MOGC01000011.1 Escherichia coli strain 622 BN4_622_1_(paired)_contig_11, whole genome shotgun sequence (254407 bp)
Overview 1 RT 1: 7153-10154 bp 2 RT 2: 35310-40484 bp Neighborhood of RT #1 [7153, 10154] InsE PHA02517 RVT-GII GIIM Neighborhood of RT #2 [35310, 40747] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 7153-7388 bp Feature: domain Description: InsE Location: 7168-7354 bp Feature: domain Description: InsE Location: 7168-7354 bp Feature: gene Location: 7397-7885 bp Feature: domain Description: PHA02517 Location: 7400-7874 bp Feature: domain Description: PHA02 517 Location: 7400-7874 bp Feature: gene Location: 7966-9474 bp Ori: OJM07301.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8224-8956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 2 4-8956 bp Feature: domain Description: GIIM Note: maturase Location: 9031-9229 bp Feature: domain Description: GIIM Note: maturase Location: 9031-92 2 9 bp Feature: gene Location: 9443-9868 bp Feature: gene Location: 9783-10154 bp Feature: gene Location: 35310-35543 bp Feature: gene Location: 36181-36417 bp Feature: gene Location: 36404-37567 bp Ori: OJM07104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36518-37205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36518-372 05 bp Feature: gene Location: 37893-38456 bp Ori: OJM07105.1 Feature: domain Description: Inovirus_Gp2 Location: 37950-38391 bp Feature: domain Description: Inovirus_Gp2 Location: 37950-38391 bp Feature: gene Location: 39314-40747 bp Ori: OJM07106.1 Feature: domain Description: DUF3987 Location: 39407-40484 bp Feature: domain Description: DUF3987 Location: 39407-40484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: MOGC01000106.1 Escherichia coli strain 622 BN4_622_1_(paired)_contig_106, whole genome shotgun sequence (6675 bp)
Overview 1 RT 1: 871-6380 bp Neighborhood of RT #1 [871, 6505] DUF3560 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 871-2232 bp Ori: OJM00224.1 Feature: domain Description: DUF3560 Location: 1138-1495 bp Feature: domain Description: DUF3 560 Location: 113 8-1495 bp Feature: gene Location: 2284-2514 bp Feature: gene Location: 3914-5581 bp Ori: OJM00226.1 Feature: domain Description: RVT_N Location: 3962-4199 bp Feature: domain Description: RVT_N Location: 3 962-4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: domain Description: GIIM Note: maturase Location: 4943-5177 bp Feature: domain Description: GIIM Note: maturase Location: 4943 -5177 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: domain Description: HNHc Note: nucleases Location: 53 87-5546 bp Feature: gene Location: 5895-6086 bp Feature: gene Location: 6083-6505 bp Ori: OJM00228.1 Feature: domain Description: DUF1380 Location: 6086-6380 bp Feature: domain Description: DUF13 80 Location: 6086-63 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)