myRT

myRT report for GCA_001891725.1_ASM189172v1

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Seq: MOGJ01000056.1 Escherichia coli strain 635 BN4_635_1_(paired)_contig_56, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJM28813.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG4930 Location: 1 0697-1 091 6 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA0251 7 Location: 1 1 033-1 1 573 bp Feature: gene Location: 11748-11984 bp Ori: OJM28814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 751 -1 1 934 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 965-1 21 78 bp Feature: gene Location: 12332-12814 bp Ori: OJM28815.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS285 Location: 1 2362-1 2740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOGJ01000104.1 Escherichia coli strain 635 BN4_635_1_(paired)_contig_105, whole genome shotgun sequence (5355 bp)
Overview 1 RT 1: 2072-4628 bp Neighborhood of RT #1 [2072, 4663] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2072-2494 bp Ori: OJM27382.1 Feature: domain Description: DUF1380 Location: 2075-2369 bp Feature: domain Description: DUF1380 Location: 2 075-2 369 bp Feature: gene Location: 2491-2682 bp Feature: gene Location: 2996-4663 bp Ori: OJM27384.1 Feature: domain Description: RVT_N Location: 3044-3281 bp Feature: domain Description: RVT_N Location: 3044-32 81 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332-3974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332 -3974 bp Feature: domain Description: GIIM Note: maturase Location: 4025-4259 bp Feature: domain Description: GIIM Note: maturase Location: 402 5-42 59 bp Feature: domain Description: HNHc Note: nucleases Location: 4469-4628 bp Feature: domain Description: HNHc Note: nucleases Location: 4469-462 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOGJ01000008.1 Escherichia coli strain 635 BN4_635_1_(paired)_contig_8, whole genome shotgun sequence (160190 bp)
Overview 1 RT 1: 77819-83723 bp Neighborhood of RT #1 [77819, 83839] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77819-78391 bp Ori: OJM38037.1 Feature: domain Description: Psu Location: 77837-78374 bp Feature: domain Description: Psu Location: 7783 7-783 74 bp Feature: gene Location: 78694-79434 bp Feature: gene Location: 79431-81059 bp Ori: OJM38039.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79839-80268 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 7983 9-80268 bp Feature: gene Location: 81052-82236 bp Ori: OJM38040.1 Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: gene Location: 82505-83839 bp Ori: OJM38110.1 Feature: domain Description: Phage_int_SAM_5 Location: 82874-83111 bp Feature: domain Description: Phage_int_SAM_5 Location: 82874-83 111 bp Feature: domain Description: INT_C_like_1 Location: 83207-83723 bp Feature: domain Description: INT_C_like_1 Location: 83 207-83 723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOGJ01000038.1 Escherichia coli strain 635 BN4_635_1_(paired)_contig_38, whole genome shotgun sequence (29001 bp)
Overview 1 RT 1: 10517-16224 bp 2 RT 2: 22198-28040 bp Neighborhood of RT #1 [10517, 16274] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22198, 28075] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10517-10888 bp Feature: gene Location: 10803-11228 bp Feature: gene Location: 11197-12705 bp Ori: OJM31088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11455-12187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 55-12187 bp Feature: domain Description: GIIM Note: maturase Location: 12262-12460 bp Feature: domain Description: GIIM Note: maturase Location: 12262-124 60 bp Feature: gene Location: 12786-13274 bp Feature: domain Description: PHA02517 Location: 12789-13245 bp Feature: domain Description: PHA02517 Location: 12789-1324 5 bp Feature: gene Location: 14880-16274 bp Ori: OJM31081.1 Feature: domain Description: MFS_ShiA_like Location: 14976-16224 bp Feature: domain Description: MFS_ShiA_like Location: 14 976-16224 bp Feature: gene Location: 22198-22476 bp Ori: OJM31084.1 Feature: domain Description: DUF5339 Location: 22261-22462 bp Feature: domain Description: DUF5339 Location: 22261-224 62 bp Feature: gene Location: 22814-23836 bp Ori: OJM31091.1 Feature: domain Description: Asparaginase_2 Location: 22895-23828 bp Feature: domain Description: Asparaginase_2 Location: 22895-23828 bp Feature: gene Location: 24369-24815 bp Ori: OJM31085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24675-24777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 675-24 777 bp Feature: gene Location: 25461-26822 bp Ori: OJM31086.1 Feature: domain Description: DcuC Location: 25464-26796 bp Feature: domain Description: DcuC Location: 254 64 -26796 bp Feature: gene Location: 26819-28075 bp Ori: OJM31087.1 Feature: domain Description: PRK13381 Location: 26825-28040 bp Feature: domain Description: PRK13381 Location: 26825-2804 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)